Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/9af3f636f045dd05c9217489ecc8f4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3b8f493c4bbd324b6d78581c167e95/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/9af3f636f045dd05c9217489ecc8f4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3b8f493c4bbd324b6d78581c167e95/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-06T01:01:44.510295Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-06T01:01:44.511048Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-06T01:01:44.511057Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-06T01:01:44.511062Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-06T01:01:44.511066Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAVk0ax'
[2026-06-06T01:01:44.511069Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-06T01:01:44.511074Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-06T01:01:44.511077Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-06T01:01:44.511081Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-06T01:01:44.511085Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-06T01:01:44.511088Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-06T01:01:44.511092Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-06T01:01:44.511095Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-06T01:01:44.511099Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-06T01:01:44.511509Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-06T01:01:44.511606Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-06T01:01:44.517447Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-06T01:01:44.518255Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-06T01:01:44.518488Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-06T01:01:44.518862Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-06T01:01:44.519051Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.519378Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.519508Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.519584Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.519705Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.519774Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.519910Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.520169Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.520576Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.520732Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.520923Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.521413Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.521793Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.524110Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.524294Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.524441Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-06T01:01:44.524732Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.524813Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.524939Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.525060Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.525440Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.525835Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526120Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526187Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526296Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526358Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526473Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526537Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526648Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526714Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526822Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.526909Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.527025Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.527216Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.527646Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.527747Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.527859Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.527923Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.528031Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.528097Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.528207Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.528267Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.528380Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.528463Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.529175Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.529533Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.529648Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.529714Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.529891Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.529989Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530099Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530164Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530275Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530335Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530449Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530512Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.530829Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.531302Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.531894Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.531964Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532078Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532140Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532254Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532344Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532487Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532569Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532683Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.532747Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.548539Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.548898Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.548985Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.549315Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.549506Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.549604Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.549672Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.551015Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.551260Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.551917Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.552142Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.552281Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-06T01:01:44.552610Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.553148Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.554187Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.555367Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.556283Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.557785Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.560615Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-06T01:01:44.562181Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.563505Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-06T01:01:44.567844Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-06T01:01:44.570836Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-06T01:01:44.573561Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-06T01:01:44.577835Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-06T01:01:44.579037Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-06T01:01:44.581427Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-06T01:01:44.642748Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.643471Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647319Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-06T01:02:07.116702Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:07.118016Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:02:07.120782Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-06T01:02:07.182119Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:07.183012Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-06T01:02:07.185670Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-06T01:02:07.998842Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:07.999677Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:02:08.002544Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-06T01:02:17.525235Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.526627Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.529284Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-06T01:02:17.590913Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.591653Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.594523Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-06T01:02:17.655632Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.656329Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.658955Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-06T01:02:19.625128Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:19.625907Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:02:19.628766Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-06T01:02:47.301139Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:47.302469Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-06T01:02:47.304993Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-06T01:02:59.824001Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.825193Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.828278Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-06T01:03:06.994650Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:06.995576Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:03:06.998297Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-06T01:03:07.059676Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:07.060353Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:07.062766Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-06T01:03:07.124449Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:07.125107Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:03:07.127745Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-06T01:03:07.189236Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:07.189920Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:07.192407Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-06T01:03:13.407748Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.408472Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.411194Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-06T01:03:13.472618Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.473337Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.475746Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-06T01:03:13.506320Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.507017Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.509433Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-06T01:03:13.539481Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.540130Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.542454Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-06T01:03:13.572166Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.572858Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:13.575440Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-06T01:03:22.646972Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:22.648189Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:03:22.650839Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-06T01:03:22.712359Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:22.713018Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:22.715487Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-06T01:03:25.433558Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.434243Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.437169Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-06T01:03:29.107552Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.108309Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.110831Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-06T01:03:29.172538Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.173149Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.175656Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-06T01:03:29.237328Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.237912Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.240522Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-06T01:03:29.269696Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.270228Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.272696Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-06T01:03:47.694355Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:47.695944Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:03:47.698683Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-06T01:03:47.760148Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:47.760703Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-06T01:03:47.763266Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-06T01:03:47.824673Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:47.825231Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:47.828004Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-06T01:03:53.090600Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.091229Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.093927Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-06T01:03:53.155208Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.155766Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.158309Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-06T01:03:53.187982Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.188551Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.190826Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-06T01:03:53.252648Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.253196Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.255304Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-06T01:03:53.285910Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.286439Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:03:53.289030Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-06T01:03:58.261629Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:58.262277Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:58.264978Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-06T01:04:00.131038Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.131680Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.134359Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-06T01:04:00.195832Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.196602Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.199308Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-06T01:04:00.260870Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.261440Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.264419Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-06T01:04:00.325471Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.326006Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.328712Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-06T01:04:21.194466Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.195690Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.198484Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-06T01:04:21.259575Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.260090Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.262867Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-06T01:04:21.324272Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.324794Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.327033Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-06T01:04:21.356689Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.357182Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.359229Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-06T01:04:21.389022Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.389516Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:04:21.391925Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-06T01:04:24.962661Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:24.963287Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:24.966428Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-06T01:04:25.028810Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.029309Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.032081Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-06T01:04:25.394116Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.394658Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.397187Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-06T01:04:25.459139Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.459628Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.462234Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-06T01:04:25.523939Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.524384Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.527109Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-06T01:04:25.556373Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.556865Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-06T01:04:25.559618Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-06T01:05:11.127384Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:11.128359Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:11.131048Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-06T01:05:11.192533Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:11.193024Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:11.195417Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-06T01:05:11.257089Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:27.976521Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:27.977491Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:05:27.980471Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-06T01:05:28.009800Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:37.535018Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:37.535519Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:05:37.538302Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-06T01:05:37.599432Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:42.374498Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:42.374981Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:05:42.377634Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-06T01:05:42.439228Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:56.263364Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:56.264389Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-06T01:05:56.267047Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-06T01:05:56.328467Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:11.254617Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:11.255797Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-06T01:06:11.258196Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-06T01:06:11.319659Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:23.038770Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:23.039821Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:06:23.042608Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-06T01:06:23.103980Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.136589Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.139742Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.144611Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-06T01:07:27.255477Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.255755Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.255911Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.256256Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.256919Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.260704Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-06T01:07:27.262067Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-06T01:07:27.298990Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-06T01:07:27.321367Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.321435Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.321463Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.321697Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.321982Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.324810Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-06T01:07:27.325537Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-06T01:07:27.387569Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.387623Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.387816Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:07:27.389988Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-06T01:07:27.419574Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:32.985196Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-06T01:07:47.883539Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-06T01:07:47.883539Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] 
[2026-06-06T01:07:47.883539Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-06T01:07:47.883615Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] 
[2026-06-06T01:07:47.883623Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-06T01:07:47.883630Z] [nf-729af3f636f045dd05c9217489ecc8f4-b021d-rsnvp] [595_1] [WorkflowRunner] Elapsed time for full workflow: 363 sec