File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/9a60b6167f7283da3eb32d0b4b2dda/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 1.8s, est remaining 34.7s, peak mem 925MB, user 46.9s, sys 1.0s, output queue size 42
progress 10% @chr2:72000001, elapsed 3.2s, est remaining 29.2s, peak mem 1373MB, user 91.5s, sys 1.6s, output queue size 70
progress 15% @chr2:230000001, elapsed 4.9s, est remaining 27.6s, peak mem 1681MB, user 140.6s, sys 2.5s, output queue size 57
progress 20% @chr3:166000001, elapsed 6.4s, est remaining 25.6s, peak mem 1681MB, user 188.2s, sys 3.1s, output queue size 141
progress 25% @chr4:102000001, elapsed 7.7s, est remaining 23.2s, peak mem 1681MB, user 231.8s, sys 3.6s, output queue size 16
progress 30% @chr5:78000001, elapsed 8.8s, est remaining 20.6s, peak mem 1681MB, user 265.9s, sys 4.0s, output queue size 19
progress 35% @chr6:76000001, elapsed 10.4s, est remaining 19.4s, peak mem 1681MB, user 307.8s, sys 4.4s, output queue size 70
progress 40% @chr7:71000001, elapsed 11.9s, est remaining 17.9s, peak mem 1746MB, user 357.2s, sys 4.9s, output queue size 194
progress 45% @chr8:71000001, elapsed 13.6s, est remaining 16.6s, peak mem 1758MB, user 406.7s, sys 5.3s, output queue size 77
progress 50% @chr9:89000001, elapsed 14.9s, est remaining 14.9s, peak mem 1758MB, user 443.3s, sys 5.7s, output queue size 187
progress 55% @chr10:111000001, elapsed 16.5s, est remaining 13.5s, peak mem 1758MB, user 494.3s, sys 6.2s, output queue size 150
progress 60% @chr11:130000001, elapsed 18.0s, est remaining 12.0s, peak mem 1787MB, user 544.0s, sys 6.7s, output queue size 59
progress 65% @chr13:30000001, elapsed 19.6s, est remaining 10.5s, peak mem 1833MB, user 589.3s, sys 7.1s, output queue size 138
progress 70% @chr14:66000001, elapsed 20.7s, est remaining 8.9s, peak mem 1914MB, user 626.9s, sys 7.5s, output queue size 299
progress 75% @chr16:38000001, elapsed 22.3s, est remaining 7.4s, peak mem 1914MB, user 667.1s, sys 7.9s, output queue size 461
progress 80% @chr18:11000001, elapsed 24.4s, est remaining 6.1s, peak mem 1914MB, user 733.8s, sys 8.5s, output queue size 86
progress 85% @chr20:21000001, elapsed 26.4s, est remaining 4.7s, peak mem 2111MB, user 802.4s, sys 9.2s, output queue size 36
progress 90% @chrX:35000001, elapsed 27.8s, est remaining 3.1s, peak mem 2111MB, user 842.6s, sys 9.6s, output queue size 78
progress 95% @chrY:53000001, elapsed 28.8s, est remaining 1.5s, peak mem 2111MB, user 877.7s, sys 10.0s, output queue size 211
progress 100% @chrX:154000001, elapsed 29.5s, est remaining 0.0s, peak mem 2111MB, user 893.7s, sys 10.2s, output queue size 3453
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34425376535
reads: 539909111
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 521.113 user 8.512 sys 530.015 real
done: 1 calls 0.000 user 0.008 sys 0.010 real
exec_no_coor: 1 calls 0.005 user 0.005 sys 0.014 real
execute: 1 calls 0.004 user 0.004 sys 29.475 real
idle: 75 calls 0.109 user 0.000 sys 39.219 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2213904384 mem 894.851 user 10.358 sys 30.660 real