Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/bdf87e5c257a0976464cf91332018e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3fa7431e6c620d4369640253248aa8/1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3fa7431e6c620d4369640253248aa8/1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/bdf87e5c257a0976464cf91332018e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_6TL-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 2.7s, est remaining 51.1s, peak mem 2284MB, user 65.3s, sys 1.8s, output queue size 47
progress 10% @chr2:42000001, elapsed 5.1s, est remaining 46.1s, peak mem 3026MB, user 141.2s, sys 3.4s, output queue size 96
progress 15% @chr3:8000001, elapsed 7.6s, est remaining 42.9s, peak mem 3823MB, user 213.2s, sys 5.6s, output queue size 122
progress 20% @chr3:176000001, elapsed 9.5s, est remaining 38.2s, peak mem 3957MB, user 274.4s, sys 6.3s, output queue size 174
progress 25% @chr4:129000001, elapsed 11.5s, est remaining 34.6s, peak mem 4071MB, user 333.0s, sys 6.7s, output queue size 302
progress 30% @chr5:101000001, elapsed 13.2s, est remaining 30.8s, peak mem 4184MB, user 384.2s, sys 7.1s, output queue size 464
progress 35% @chr6:72000001, elapsed 15.6s, est remaining 28.9s, peak mem 4393MB, user 451.4s, sys 8.0s, output queue size 625
progress 40% @chr7:66000001, elapsed 18.2s, est remaining 27.3s, peak mem 4787MB, user 520.8s, sys 8.7s, output queue size 786
progress 45% @chr8:82000001, elapsed 21.6s, est remaining 26.4s, peak mem 5419MB, user 627.0s, sys 9.5s, output queue size 204
progress 50% @chr9:81000001, elapsed 26.2s, est remaining 26.2s, peak mem 7121MB, user 753.0s, sys 10.7s, output queue size 366
progress 55% @chr10:97000001, elapsed 29.2s, est remaining 23.9s, peak mem 7126MB, user 839.4s, sys 11.6s, output queue size 527
progress 60% @chr11:134000001, elapsed 31.3s, est remaining 20.9s, peak mem 7259MB, user 923.5s, sys 12.3s, output queue size 510
progress 65% @chr13:33000001, elapsed 34.2s, est remaining 18.4s, peak mem 7259MB, user 1012.8s, sys 13.0s, output queue size 474
progress 70% @chr14:83000001, elapsed 35.8s, est remaining 15.3s, peak mem 7259MB, user 1066.6s, sys 13.4s, output queue size 635
progress 75% @chr16:42000001, elapsed 38.7s, est remaining 12.9s, peak mem 7259MB, user 1137.7s, sys 13.9s, output queue size 797
progress 80% @chr18:13000001, elapsed 42.4s, est remaining 10.6s, peak mem 7259MB, user 1250.9s, sys 14.7s, output queue size 623
progress 85% @chr20:23000001, elapsed 45.4s, est remaining 8.0s, peak mem 7259MB, user 1331.1s, sys 15.4s, output queue size 785
progress 90% @chr22:20000001, elapsed 47.7s, est remaining 5.3s, peak mem 7286MB, user 1409.4s, sys 15.9s, output queue size 947
progress 95% @chrY:53000001, elapsed 49.7s, est remaining 2.6s, peak mem 7286MB, user 1463.1s, sys 16.4s, output queue size 1109
progress 100% @chrX:67000001, elapsed 56.1s, est remaining 0.0s, peak mem 7296MB, user 1556.2s, sys 16.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 44707427019
reads: 902411031
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 711.722 user 14.505 sys 725.098 real
done: 1 calls 0.025 user 0.018 sys 0.051 real
exec_no_coor: 1 calls 0.004 user 0.005 sys 0.015 real
execute: 1 calls 0.007 user 0.002 sys 56.139 real
idle: 223 calls 0.119 user 0.001 sys 197.597 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7650820096 mem 1557.225 user 17.047 sys 57.432 real