File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/e73bc6f0a104fbbcf554ff272f8fc6/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 2.1s, est remaining 40.7s, peak mem 969MB, user 53.8s, sys 1.0s, output queue size 42
progress 10% @chr2:79000001, elapsed 3.8s, est remaining 33.8s, peak mem 1468MB, user 106.9s, sys 1.5s, output queue size 70
progress 15% @chr2:224000001, elapsed 5.6s, est remaining 31.9s, peak mem 1785MB, user 163.3s, sys 2.6s, output queue size 57
progress 20% @chr3:119000001, elapsed 7.4s, est remaining 29.6s, peak mem 1785MB, user 215.6s, sys 3.2s, output queue size 141
progress 25% @chr4:130000001, elapsed 8.9s, est remaining 26.8s, peak mem 1862MB, user 268.1s, sys 3.9s, output queue size 16
progress 30% @chr5:107000001, elapsed 10.2s, est remaining 23.7s, peak mem 1889MB, user 306.1s, sys 4.3s, output queue size 19
progress 35% @chr6:76000001, elapsed 12.0s, est remaining 22.2s, peak mem 2056MB, user 354.3s, sys 4.8s, output queue size 70
progress 40% @chr7:70000001, elapsed 13.7s, est remaining 20.5s, peak mem 2176MB, user 408.2s, sys 5.5s, output queue size 195
progress 45% @chr8:69000001, elapsed 15.6s, est remaining 19.1s, peak mem 2215MB, user 464.7s, sys 6.0s, output queue size 204
progress 50% @chr9:89000001, elapsed 17.1s, est remaining 17.1s, peak mem 2308MB, user 509.3s, sys 6.3s, output queue size 187
progress 55% @chr10:95000001, elapsed 19.0s, est remaining 15.5s, peak mem 2313MB, user 570.6s, sys 6.8s, output queue size 150
progress 60% @chr12:3000001, elapsed 20.9s, est remaining 13.9s, peak mem 2379MB, user 628.7s, sys 7.3s, output queue size 61
progress 65% @chr13:30000001, elapsed 22.7s, est remaining 12.2s, peak mem 2401MB, user 684.6s, sys 7.7s, output queue size 138
progress 70% @chr14:82000001, elapsed 24.1s, est remaining 10.3s, peak mem 2438MB, user 727.9s, sys 8.0s, output queue size 299
progress 75% @chr16:40000001, elapsed 25.9s, est remaining 8.6s, peak mem 2540MB, user 775.3s, sys 8.4s, output queue size 461
progress 80% @chr18:2000001, elapsed 28.5s, est remaining 7.1s, peak mem 2583MB, user 856.5s, sys 8.9s, output queue size 86
progress 85% @chr20:21000001, elapsed 31.0s, est remaining 5.5s, peak mem 2684MB, user 941.0s, sys 9.7s, output queue size 46
progress 90% @chrX:30000001, elapsed 32.6s, est remaining 3.6s, peak mem 2684MB, user 989.5s, sys 10.1s, output queue size 78
progress 95% @chrY:53000001, elapsed 33.8s, est remaining 1.8s, peak mem 2684MB, user 1029.3s, sys 10.5s, output queue size 211
progress 100% @chrX:154000001, elapsed 34.5s, est remaining 0.0s, peak mem 2684MB, user 1046.8s, sys 10.8s, output queue size 3453
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34425376535
reads: 539909111
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 527.758 user 9.048 sys 539.026 real
done: 1 calls 0.226 user 0.039 sys 0.274 real
exec_no_coor: 1 calls 0.008 user 0.000 sys 0.013 real
execute: 1 calls 0.001 user 0.001 sys 34.554 real
idle: 76 calls 0.129 user 0.000 sys 43.037 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2814676992 mem 1048.566 user 11.199 sys 36.114 real