cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_7OW-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119513834, elapsed 9.0s, est remaining 171.6s, peak mem 5383MB, user 237.0s, sys 6.0s, output queue size 178
progress 10% @chr2:23695623, elapsed 17.1s, est remaining 154.2s, peak mem 6296MB, user 455.5s, sys 8.4s, output queue size 1150
progress 15% @chr2:185788643, elapsed 26.6s, est remaining 150.5s, peak mem 7218MB, user 709.2s, sys 11.1s, output queue size 267
progress 20% @chr3:98588713, elapsed 36.4s, est remaining 145.6s, peak mem 7501MB, user 976.1s, sys 13.2s, output queue size 415
progress 25% @chr4:88439874, elapsed 44.2s, est remaining 132.7s, peak mem 7653MB, user 1182.8s, sys 14.8s, output queue size 88
progress 30% @chr5:146514854, elapsed 51.1s, est remaining 119.1s, peak mem 7740MB, user 1362.4s, sys 16.1s, output queue size 205
progress 35% @chr6:131700469, elapsed 61.0s, est remaining 113.4s, peak mem 8441MB, user 1630.4s, sys 18.3s, output queue size 638
progress 40% @chr7:128844658, elapsed 71.3s, est remaining 107.0s, peak mem 8778MB, user 1901.6s, sys 20.3s, output queue size 543
progress 45% @chr9:420949, elapsed 82.8s, est remaining 101.2s, peak mem 8918MB, user 2221.0s, sys 22.4s, output queue size 34
progress 50% @chr10:33270675, elapsed 92.3s, est remaining 92.3s, peak mem 8918MB, user 2477.8s, sys 23.9s, output queue size 107
progress 55% @chr11:48324941, elapsed 100.3s, est remaining 82.1s, peak mem 8940MB, user 2692.2s, sys 25.3s, output queue size 15
progress 60% @chr12:25011371, elapsed 110.3s, est remaining 73.5s, peak mem 8945MB, user 2960.7s, sys 27.0s, output queue size 753
progress 65% @chr13:49267490, elapsed 119.2s, est remaining 64.2s, peak mem 9012MB, user 3205.2s, sys 28.5s, output queue size 545
progress 70% @chr15:43151790, elapsed 127.7s, est remaining 54.7s, peak mem 9012MB, user 3430.6s, sys 30.1s, output queue size 455
progress 75% @chr16:30985659, elapsed 137.7s, est remaining 45.9s, peak mem 9012MB, user 3708.8s, sys 31.8s, output queue size 35
progress 80% @chr17:42688462, elapsed 148.7s, est remaining 37.2s, peak mem 9012MB, user 4010.9s, sys 33.8s, output queue size 705
progress 85% @chr19:5768168, elapsed 157.6s, est remaining 27.8s, peak mem 9012MB, user 4256.8s, sys 35.5s, output queue size 406
progress 90% @chr19:55738095, elapsed 166.1s, est remaining 18.5s, peak mem 9012MB, user 4488.1s, sys 37.0s, output queue size 66
progress 95% @chr22:36587465, elapsed 175.7s, est remaining 9.2s, peak mem 9072MB, user 4748.0s, sys 38.7s, output queue size 23
progress 100% @chrY:25622443, elapsed 181.7s, est remaining 0.0s, peak mem 9072MB, user 4907.0s, sys 39.9s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 66871250911
reads: 1299975145
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2521.341 user 32.042 sys 2649.959 real
done: 1 calls 0.394 user 0.351 sys 0.752 real
execute: 1 calls 0.011 user 0.000 sys 181.759 real
fetch_reads: 208647 calls 227.471 user 0.347 sys 234.639 real
fetch_ref: 207305 calls 1.115 user 1.084 sys 2.217 real
fetch_vcf: 207305 calls 82.726 user 2.449 sys 86.278 real
idle: 122 calls 0.261 user 0.001 sys 33.168 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 486591 calls 2460.319 user 2.444 sys 2525.817 real
overall: 9513324544 mem 5491.850 user 41.067 sys 183.342 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory