cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:148000001, elapsed 24.4s, est remaining 463.8s, peak mem 5025MB, user 447.7s, sys 6.6s, output queue size 42
progress 10% @chr2:71000001, elapsed 50.1s, est remaining 450.5s, peak mem 6878MB, user 1375.5s, sys 13.1s, output queue size 166
progress 15% @chr3:5000001, elapsed 68.7s, est remaining 389.2s, peak mem 7084MB, user 1943.8s, sys 16.2s, output queue size 328
progress 20% @chr3:149000001, elapsed 85.0s, est remaining 339.9s, peak mem 7084MB, user 2504.0s, sys 18.9s, output queue size 141
progress 25% @chr4:103000001, elapsed 98.7s, est remaining 296.1s, peak mem 7084MB, user 2919.2s, sys 21.1s, output queue size 302
progress 30% @chr5:107000001, elapsed 109.3s, est remaining 255.0s, peak mem 7094MB, user 3234.5s, sys 22.5s, output queue size 464
progress 35% @chr6:79000001, elapsed 130.6s, est remaining 242.5s, peak mem 7507MB, user 3820.5s, sys 25.3s, output queue size 70
progress 40% @chr7:45000001, elapsed 149.2s, est remaining 223.8s, peak mem 7974MB, user 4327.1s, sys 27.7s, output queue size 197
progress 45% @chr8:58000001, elapsed 171.0s, est remaining 209.0s, peak mem 8110MB, user 4910.5s, sys 30.7s, output queue size 357
progress 50% @chr9:91000001, elapsed 191.6s, est remaining 191.6s, peak mem 8365MB, user 5661.6s, sys 34.5s, output queue size 187
progress 55% @chr10:94000001, elapsed 215.6s, est remaining 176.4s, peak mem 8721MB, user 6433.0s, sys 38.2s, output queue size 150
progress 60% @chr11:125000001, elapsed 234.9s, est remaining 156.6s, peak mem 8828MB, user 6909.3s, sys 40.9s, output queue size 312
progress 65% @chr13:18000001, elapsed 254.9s, est remaining 137.2s, peak mem 8970MB, user 7601.0s, sys 45.0s, output queue size 138
progress 70% @chr14:83000001, elapsed 270.4s, est remaining 115.9s, peak mem 9002MB, user 8132.6s, sys 47.4s, output queue size 75
progress 75% @chr16:42000001, elapsed 291.6s, est remaining 97.2s, peak mem 9002MB, user 8685.8s, sys 50.3s, output queue size 118
progress 80% @chr18:10000001, elapsed 319.8s, est remaining 80.0s, peak mem 9002MB, user 9495.3s, sys 54.4s, output queue size 189
progress 85% @chr19:35000001, elapsed 348.3s, est remaining 61.5s, peak mem 9057MB, user 10383.9s, sys 58.1s, output queue size 351
progress 90% @chrX:31000001, elapsed 368.9s, est remaining 41.0s, peak mem 9090MB, user 11066.7s, sys 60.7s, output queue size 78
progress 95% @chrY:23000001, elapsed 383.2s, est remaining 20.2s, peak mem 9090MB, user 11495.3s, sys 62.8s, output queue size 211
progress 100% @chr22:23000001, elapsed 399.7s, est remaining 0.0s, peak mem 9183MB, user 11798.4s, sys 64.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 49280866937
output file size: 75068520848
reads: 991312774
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.027 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.026 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1108.128 user 17.286 sys 1166.519 real
done: 1 calls 0.503 user 0.318 sys 0.830 real
exec_no_coor: 1 calls 0.078 user 0.073 sys 0.170 real
execute: 1 calls 0.005 user 0.000 sys 400.604 real
fetch: 3219323 calls 54.261 user 0.474 sys 81.241 real
fetch_reads: 3219322 calls 198.283 user 0.947 sys 206.020 real
fetch_ref: 1954940 calls 6.261 user 1.097 sys 8.135 real
fetch_vcf: 1954940 calls 100.130 user 1.651 sys 106.886 real
idle: 28401 calls 11.633 user 0.303 sys 408.451 real
init: 1 calls 0.005 user 0.000 sys 0.031 real
update: 2195015 calls 2546.382 user 4.443 sys 2688.142 real
write: 3219323 calls 8505.781 user 33.922 sys 8607.145 real
overall: 9630019584 mem 11819.926 user 87.428 sys 402.977 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.table --after 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.table.post 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.037 user 0.013 sys 0.042 real
done: 1 calls 0.064 user 0.016 sys 0.079 real
idle: 61 calls 0.002 user 0.000 sys 31.326 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.088 user 0.039 sys 1.055 real