cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_Lx-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_Lx-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119421809, elapsed 0.2s, est remaining 3.5s, peak mem 2400MB, user 0.8s, sys 2.8s, output queue size 395
progress 10% @chr2:17779978, elapsed 0.3s, est remaining 2.3s, peak mem 2412MB, user 1.1s, sys 2.8s, output queue size 144
progress 15% @chr2:185799697, elapsed 0.3s, est remaining 1.8s, peak mem 2414MB, user 1.2s, sys 2.8s, output queue size 236
progress 20% @chr3:98390666, elapsed 0.4s, est remaining 1.5s, peak mem 2414MB, user 1.3s, sys 2.8s, output queue size 184
progress 25% @chr4:88521574, elapsed 0.4s, est remaining 1.2s, peak mem 2414MB, user 1.4s, sys 2.8s, output queue size 158
progress 30% @chr5:147629693, elapsed 0.5s, est remaining 1.1s, peak mem 2415MB, user 1.5s, sys 2.8s, output queue size 155
progress 35% @chr6:131677868, elapsed 0.5s, est remaining 1.0s, peak mem 2421MB, user 1.6s, sys 2.8s, output queue size 575
progress 40% @chr7:128850803, elapsed 0.6s, est remaining 0.9s, peak mem 2427MB, user 1.7s, sys 2.8s, output queue size 139
progress 45% @chr8:144930738, elapsed 0.6s, est remaining 0.8s, peak mem 2430MB, user 1.9s, sys 2.8s, output queue size 165
progress 50% @chr10:32928094, elapsed 0.7s, est remaining 0.7s, peak mem 2430MB, user 2.0s, sys 2.8s, output queue size 106
progress 55% @chr11:48263861, elapsed 0.7s, est remaining 0.6s, peak mem 2430MB, user 2.0s, sys 2.9s, output queue size 191
progress 60% @chr12:22474751, elapsed 0.8s, est remaining 0.5s, peak mem 2430MB, user 2.1s, sys 2.9s, output queue size 145
progress 65% @chr13:49491732, elapsed 0.8s, est remaining 0.4s, peak mem 2430MB, user 2.2s, sys 2.9s, output queue size 117
progress 70% @chr15:43048392, elapsed 0.9s, est remaining 0.4s, peak mem 2430MB, user 2.3s, sys 2.9s, output queue size 224
progress 75% @chr16:30667542, elapsed 0.9s, est remaining 0.3s, peak mem 2430MB, user 2.4s, sys 2.9s, output queue size 126
progress 80% @chr17:42199177, elapsed 1.0s, est remaining 0.2s, peak mem 2430MB, user 2.4s, sys 2.9s, output queue size 106
progress 85% @chr19:5719704, elapsed 1.0s, est remaining 0.2s, peak mem 2433MB, user 2.5s, sys 2.9s, output queue size 98
progress 90% @chr19:55481201, elapsed 1.1s, est remaining 0.1s, peak mem 2433MB, user 2.6s, sys 2.9s, output queue size 241
progress 95% @chr22:36930612, elapsed 1.1s, est remaining 0.1s, peak mem 2433MB, user 2.7s, sys 2.9s, output queue size 111
progress 100% @chr6_GL000251v2_alt:3935152, elapsed 1.2s, est remaining 0.0s, peak mem 2433MB, user 2.7s, sys 2.9s, output queue size 10
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 29954637
reads: 524817
contig: 201779 intervals 37922265 bases
advance: 208647 calls 0.345 user 0.050 sys 6.166 real
done: 1 calls 0.256 user 0.117 sys 0.382 real
execute: 1 calls 0.013 user 0.001 sys 1.189 real
fetch_reads: 208647 calls 0.004 user 0.000 sys 0.094 real
fetch_ref: 39982 calls 0.009 user 0.004 sys 0.226 real
fetch_vcf: 39982 calls 1.541 user 0.060 sys 21.011 real
idle: 92 calls 0.004 user 0.000 sys 31.609 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 39982 calls 0.764 user 2.745 sys 5.079 real
overall: 2551721984 mem 29.667 user 5.375 sys 2.586 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory