File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/9bcdf2d8222fdf7b73d71320ed5771/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_N5D-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 6.9s, est remaining 130.5s, peak mem 5497MB, user 152.5s, sys 6.1s, output queue size 150
progress 10% @chr2:90000001, elapsed 12.0s, est remaining 107.8s, peak mem 7112MB, user 324.1s, sys 10.5s, output queue size 117
progress 15% @chr2:177000001, elapsed 17.5s, est remaining 99.3s, peak mem 10842MB, user 489.8s, sys 14.7s, output queue size 203
progress 20% @chr3:158000001, elapsed 22.6s, est remaining 90.6s, peak mem 13032MB, user 628.0s, sys 16.5s, output queue size 364
progress 25% @chr4:129000001, elapsed 26.7s, est remaining 80.2s, peak mem 13225MB, user 771.9s, sys 20.6s, output queue size 302
progress 30% @chr5:100000001, elapsed 30.0s, est remaining 70.1s, peak mem 13225MB, user 860.3s, sys 21.5s, output queue size 464
progress 35% @chr6:70000001, elapsed 35.2s, est remaining 65.4s, peak mem 13764MB, user 993.5s, sys 22.9s, output queue size 625
progress 40% @chr7:65000001, elapsed 40.8s, est remaining 61.2s, peak mem 14200MB, user 1173.2s, sys 24.5s, output queue size 197
progress 45% @chr8:74000001, elapsed 46.7s, est remaining 57.0s, peak mem 15438MB, user 1351.7s, sys 26.3s, output queue size 356
progress 50% @chr9:81000001, elapsed 51.6s, est remaining 51.6s, peak mem 16019MB, user 1489.7s, sys 27.6s, output queue size 366
progress 55% @chr10:99000001, elapsed 57.6s, est remaining 47.1s, peak mem 16708MB, user 1672.6s, sys 29.8s, output queue size 400
progress 60% @chr12:3000001, elapsed 63.5s, est remaining 42.4s, peak mem 16708MB, user 1857.3s, sys 31.7s, output queue size 562
progress 65% @chr13:24000001, elapsed 69.7s, est remaining 37.5s, peak mem 16708MB, user 1995.7s, sys 33.0s, output queue size 724
progress 70% @chr14:35000001, elapsed 73.4s, est remaining 31.4s, peak mem 16708MB, user 2140.6s, sys 34.1s, output queue size 885
progress 75% @chr16:42000001, elapsed 80.0s, est remaining 26.7s, peak mem 16708MB, user 2366.4s, sys 36.0s, output queue size 461
progress 80% @chr18:13000001, elapsed 89.5s, est remaining 22.4s, peak mem 16708MB, user 2626.3s, sys 38.0s, output queue size 623
progress 85% @chr19:15000001, elapsed 98.0s, est remaining 17.3s, peak mem 16708MB, user 2908.3s, sys 39.9s, output queue size 785
progress 90% @chr19:8000001, elapsed 103.5s, est remaining 11.5s, peak mem 16708MB, user 3102.6s, sys 41.2s, output queue size 513
progress 95% @chrY:53000001, elapsed 106.6s, est remaining 5.6s, peak mem 16833MB, user 3180.5s, sys 41.8s, output queue size 675
progress 100% @chr15:88000001, elapsed 121.5s, est remaining 0.0s, peak mem 16833MB, user 3338.2s, sys 43.1s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 108867292734
reads: 2060211395
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1667.177 user 38.420 sys 1709.161 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.010 user 0.010 sys 0.037 real
execute: 1 calls 0.001 user 0.000 sys 121.522 real
idle: 442 calls 0.187 user 0.001 sys 413.811 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 17650855936 mem 3339.254 user 43.826 sys 123.162 real