.command.sh - Workdir - DAQ:SAMTOOLS_IDXSTATS_COUNT (FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/e73dd261f55d19e00e0c8d482e4adb/.command.sh
Size: 324 bytes
Task: DAQ:SAMTOOLS_IDXSTATS_COUNT (FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam.bai > FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS