cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_bR4-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 9.1s, est remaining 173.6s, peak mem 6320MB, user 245.5s, sys 5.8s, output queue size 173
progress 10% @chr2:23875829, elapsed 19.3s, est remaining 173.8s, peak mem 8336MB, user 527.5s, sys 9.4s, output queue size 1165
progress 15% @chr2:185788643, elapsed 31.0s, est remaining 175.9s, peak mem 9323MB, user 856.8s, sys 12.8s, output queue size 425
progress 20% @chr3:100295087, elapsed 41.6s, est remaining 166.5s, peak mem 9995MB, user 1149.5s, sys 15.1s, output queue size 705
progress 25% @chr4:88504495, elapsed 49.8s, est remaining 149.5s, peak mem 9995MB, user 1372.6s, sys 17.1s, output queue size 539
progress 30% @chr5:147631413, elapsed 58.0s, est remaining 135.3s, peak mem 10146MB, user 1596.1s, sys 18.8s, output queue size 205
progress 35% @chr6:131886562, elapsed 68.0s, est remaining 126.3s, peak mem 10146MB, user 1867.2s, sys 20.6s, output queue size 636
progress 40% @chr7:128838267, elapsed 80.4s, est remaining 120.5s, peak mem 10271MB, user 2204.8s, sys 23.1s, output queue size 541
progress 45% @chr9:441875, elapsed 92.3s, est remaining 112.8s, peak mem 10446MB, user 2544.5s, sys 25.3s, output queue size 22
progress 50% @chr10:33334310, elapsed 103.7s, est remaining 103.7s, peak mem 10676MB, user 2860.0s, sys 27.6s, output queue size 106
progress 55% @chr11:48245104, elapsed 112.1s, est remaining 91.7s, peak mem 10676MB, user 3087.3s, sys 28.9s, output queue size 14
progress 60% @chr12:25119145, elapsed 122.9s, est remaining 81.9s, peak mem 10676MB, user 3382.8s, sys 30.6s, output queue size 758
progress 65% @chr13:49931018, elapsed 133.2s, est remaining 71.7s, peak mem 10676MB, user 3672.3s, sys 32.3s, output queue size 1012
progress 70% @chr15:42694528, elapsed 143.3s, est remaining 61.4s, peak mem 10676MB, user 3949.0s, sys 34.4s, output queue size 454
progress 75% @chr16:30953185, elapsed 152.5s, est remaining 50.8s, peak mem 10676MB, user 4205.6s, sys 36.2s, output queue size 36
progress 80% @chr17:40339002, elapsed 162.9s, est remaining 40.7s, peak mem 10676MB, user 4497.1s, sys 38.2s, output queue size 692
progress 85% @chr19:5694387, elapsed 173.3s, est remaining 30.6s, peak mem 10676MB, user 4788.3s, sys 40.1s, output queue size 407
progress 90% @chr19:55613619, elapsed 183.0s, est remaining 20.3s, peak mem 10676MB, user 5055.9s, sys 41.8s, output queue size 64
progress 95% @chr22:36991481, elapsed 192.6s, est remaining 10.1s, peak mem 10676MB, user 5318.3s, sys 43.7s, output queue size 855
progress 100% @chrY:25622443, elapsed 199.7s, est remaining 0.0s, peak mem 10676MB, user 5512.1s, sys 44.8s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 83203675103
reads: 1632923217
contig: 201779 intervals 37922265 bases
advance: 208647 calls 3145.262 user 37.588 sys 3278.830 real
done: 1 calls 0.437 user 0.320 sys 0.759 real
execute: 1 calls 0.006 user 0.002 sys 199.691 real
fetch_reads: 208647 calls 261.145 user 0.467 sys 266.517 real
fetch_ref: 207376 calls 1.103 user 0.945 sys 2.179 real
fetch_vcf: 207376 calls 81.691 user 2.110 sys 85.969 real
idle: 94 calls 0.155 user 0.000 sys 33.076 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 463421 calls 2368.336 user 2.206 sys 2424.424 real
overall: 11194912768 mem 6047.258 user 46.189 sys 201.313 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory