File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a0fdbfb4d559cc66f74c31fcf60add/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cfy-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_cfy-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:109000001, elapsed 4.6s, est remaining 87.3s, peak mem 4125MB, user 110.2s, sys 2.7s, output queue size 146
progress 10% @chr2:42000001, elapsed 8.5s, est remaining 76.4s, peak mem 5068MB, user 231.2s, sys 5.3s, output queue size 56
progress 15% @chr3:18000001, elapsed 12.8s, est remaining 72.8s, peak mem 6959MB, user 353.6s, sys 9.8s, output queue size 188
progress 20% @chr3:128000001, elapsed 16.3s, est remaining 65.3s, peak mem 7255MB, user 465.9s, sys 12.1s, output queue size 174
progress 25% @chr3:179000001, elapsed 19.4s, est remaining 58.3s, peak mem 7379MB, user 561.7s, sys 13.4s, output queue size 302
progress 30% @chr5:107000001, elapsed 21.9s, est remaining 51.0s, peak mem 7502MB, user 632.4s, sys 14.1s, output queue size 464
progress 35% @chr6:82000001, elapsed 25.3s, est remaining 47.1s, peak mem 7632MB, user 731.0s, sys 15.0s, output queue size 625
progress 40% @chr7:66000001, elapsed 28.7s, est remaining 43.1s, peak mem 7821MB, user 821.8s, sys 15.8s, output queue size 786
progress 45% @chr8:58000001, elapsed 33.1s, est remaining 40.5s, peak mem 8130MB, user 949.1s, sys 17.0s, output queue size 948
progress 50% @chr9:87000001, elapsed 36.2s, est remaining 36.2s, peak mem 8130MB, user 1050.6s, sys 17.8s, output queue size 366
progress 55% @chr10:104000001, elapsed 39.7s, est remaining 32.5s, peak mem 8130MB, user 1161.2s, sys 18.8s, output queue size 527
progress 60% @chr12:1000001, elapsed 43.6s, est remaining 29.0s, peak mem 8130MB, user 1263.1s, sys 19.6s, output queue size 689
progress 65% @chr12:111000001, elapsed 47.9s, est remaining 25.8s, peak mem 8130MB, user 1408.3s, sys 20.6s, output queue size 672
progress 70% @chr14:35000001, elapsed 50.4s, est remaining 21.6s, peak mem 8130MB, user 1482.9s, sys 21.0s, output queue size 833
progress 75% @chr16:41000001, elapsed 55.2s, est remaining 18.4s, peak mem 8291MB, user 1609.5s, sys 22.1s, output queue size 995
progress 80% @chr18:29000001, elapsed 61.7s, est remaining 15.4s, peak mem 8411MB, user 1782.3s, sys 23.4s, output queue size 1157
progress 85% @chr20:48000001, elapsed 67.6s, est remaining 11.9s, peak mem 8493MB, user 1993.8s, sys 24.8s, output queue size 785
progress 90% @chrX:30000001, elapsed 71.2s, est remaining 7.9s, peak mem 8665MB, user 2138.1s, sys 25.7s, output queue size 513
progress 95% @chrY:54000001, elapsed 74.1s, est remaining 3.9s, peak mem 8669MB, user 2202.0s, sys 26.2s, output queue size 675
progress 100% @chrX:67000001, elapsed 82.9s, est remaining 0.0s, peak mem 8840MB, user 2330.2s, sys 27.2s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 69852823730
reads: 1410512872
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1088.763 user 23.674 sys 1115.647 real
done: 1 calls 0.019 user 0.000 sys 0.028 real
exec_no_coor: 1 calls 0.004 user 0.009 sys 0.026 real
execute: 1 calls 0.008 user 0.001 sys 82.912 real
idle: 272 calls 0.155 user 0.001 sys 242.146 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9270128640 mem 2331.226 user 27.336 sys 84.233 real