cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 6.8s, est remaining 129.3s, peak mem 2007MB, user 159.4s, sys 1.9s, output queue size 146
progress 10% @chr2:71000001, elapsed 12.0s, est remaining 107.8s, peak mem 2876MB, user 333.4s, sys 2.8s, output queue size 117
progress 15% @chr2:177000001, elapsed 17.6s, est remaining 99.6s, peak mem 3168MB, user 511.7s, sys 4.0s, output queue size 122
progress 20% @chr3:167000001, elapsed 22.9s, est remaining 91.4s, peak mem 3187MB, user 668.6s, sys 4.6s, output queue size 141
progress 25% @chr4:124000001, elapsed 27.4s, est remaining 82.1s, peak mem 3303MB, user 809.5s, sys 5.2s, output queue size 302
progress 30% @chr5:94000001, elapsed 30.9s, est remaining 72.2s, peak mem 3372MB, user 916.9s, sys 5.6s, output queue size 464
progress 35% @chr6:79000001, elapsed 36.3s, est remaining 67.4s, peak mem 3529MB, user 1058.2s, sys 6.0s, output queue size 625
progress 40% @chr7:2000001, elapsed 42.3s, est remaining 63.4s, peak mem 3670MB, user 1261.9s, sys 6.7s, output queue size 195
progress 45% @chr8:78000001, elapsed 48.6s, est remaining 59.4s, peak mem 3713MB, user 1441.9s, sys 7.2s, output queue size 204
progress 50% @chr9:88000001, elapsed 53.6s, est remaining 53.6s, peak mem 3835MB, user 1582.5s, sys 7.6s, output queue size 366
progress 55% @chr10:118000001, elapsed 60.4s, est remaining 49.4s, peak mem 3905MB, user 1795.6s, sys 8.4s, output queue size 348
progress 60% @chr11:117000001, elapsed 67.0s, est remaining 44.7s, peak mem 3936MB, user 1982.6s, sys 9.0s, output queue size 510
progress 65% @chr13:33000001, elapsed 73.4s, est remaining 39.5s, peak mem 4028MB, user 2188.6s, sys 9.6s, output queue size 474
progress 70% @chr14:35000001, elapsed 77.2s, est remaining 33.1s, peak mem 4028MB, user 2337.8s, sys 10.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 84.1s, est remaining 28.0s, peak mem 4028MB, user 2527.6s, sys 10.7s, output queue size 461
progress 80% @chr18:11000001, elapsed 94.5s, est remaining 23.6s, peak mem 4056MB, user 2804.3s, sys 11.5s, output queue size 623
progress 85% @chr19:47000001, elapsed 103.6s, est remaining 18.3s, peak mem 4075MB, user 3133.5s, sys 12.3s, output queue size 351
progress 90% @chrX:30000001, elapsed 109.4s, est remaining 12.2s, peak mem 4083MB, user 3310.9s, sys 12.8s, output queue size 513
progress 95% @chrY:55000001, elapsed 112.9s, est remaining 5.9s, peak mem 4173MB, user 3401.9s, sys 13.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 125.8s, est remaining 0.0s, peak mem 4186MB, user 3550.0s, sys 13.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 40063100595
reads: 753549713
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 646.348 user 11.092 sys 655.393 real
done: 1 calls 0.049 user 0.000 sys 0.052 real
exec_no_coor: 1 calls 0.011 user 0.000 sys 0.014 real
execute: 1 calls 0.004 user 0.005 sys 125.934 real
idle: 394 calls 0.154 user 0.001 sys 370.730 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 4389883904 mem 3552.091 user 13.848 sys 127.140 real