cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119986928, elapsed 12.1s, est remaining 230.4s, peak mem 5884MB, user 324.9s, sys 7.3s, output queue size 171
progress 10% @chr2:20670464, elapsed 23.4s, est remaining 210.8s, peak mem 6753MB, user 634.7s, sys 10.3s, output queue size 649
progress 15% @chr2:190057258, elapsed 36.0s, est remaining 204.1s, peak mem 7668MB, user 980.5s, sys 13.2s, output queue size 290
progress 20% @chr3:98788326, elapsed 49.0s, est remaining 196.0s, peak mem 7796MB, user 1338.9s, sys 15.6s, output queue size 414
progress 25% @chr4:88487069, elapsed 59.6s, est remaining 178.9s, peak mem 7983MB, user 1626.9s, sys 17.4s, output queue size 88
progress 30% @chr5:147400692, elapsed 69.2s, est remaining 161.4s, peak mem 8227MB, user 1883.1s, sys 19.0s, output queue size 207
progress 35% @chr6:127143030, elapsed 83.4s, est remaining 154.9s, peak mem 9094MB, user 2275.3s, sys 21.9s, output queue size 635
progress 40% @chr7:116769636, elapsed 96.4s, est remaining 144.5s, peak mem 9591MB, user 2628.1s, sys 24.2s, output queue size 1441
progress 45% @chr8:127734017, elapsed 109.6s, est remaining 134.0s, peak mem 9856MB, user 3000.5s, sys 26.4s, output queue size 1446
progress 50% @chr10:34131463, elapsed 122.1s, est remaining 122.1s, peak mem 9974MB, user 3343.7s, sys 28.3s, output queue size 98
progress 55% @chr11:48163458, elapsed 132.8s, est remaining 108.7s, peak mem 10014MB, user 3634.0s, sys 30.0s, output queue size 11
progress 60% @chr12:25052235, elapsed 145.7s, est remaining 97.1s, peak mem 10120MB, user 3985.2s, sys 32.0s, output queue size 751
progress 65% @chr13:49476476, elapsed 157.0s, est remaining 84.6s, peak mem 10193MB, user 4302.9s, sys 33.9s, output queue size 567
progress 70% @chr15:43085984, elapsed 167.3s, est remaining 71.7s, peak mem 10193MB, user 4583.4s, sys 35.4s, output queue size 455
progress 75% @chr16:30768103, elapsed 179.1s, est remaining 59.7s, peak mem 10193MB, user 4915.0s, sys 37.3s, output queue size 32
progress 80% @chr17:42688462, elapsed 192.1s, est remaining 48.0s, peak mem 10193MB, user 5278.8s, sys 39.6s, output queue size 706
progress 85% @chr19:5692032, elapsed 202.1s, est remaining 35.7s, peak mem 10193MB, user 5557.1s, sys 41.1s, output queue size 403
progress 90% @chr19:55577951, elapsed 211.5s, est remaining 23.5s, peak mem 10193MB, user 5817.6s, sys 42.6s, output queue size 54
progress 95% @chr22:36762904, elapsed 222.2s, est remaining 11.7s, peak mem 10280MB, user 6115.3s, sys 44.5s, output queue size 25
progress 100% @chrY:25622443, elapsed 228.7s, est remaining 0.0s, peak mem 10284MB, user 6290.2s, sys 45.6s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 74522276073
reads: 1535620780
contig: 201779 intervals 37922265 bases
advance: 208647 calls 3349.180 user 37.988 sys 3498.592 real
done: 1 calls 0.308 user 0.554 sys 0.862 real
execute: 1 calls 0.000 user 0.010 sys 228.744 real
fetch_reads: 208647 calls 327.692 user 0.392 sys 336.349 real
fetch_ref: 207189 calls 0.989 user 0.983 sys 1.896 real
fetch_vcf: 207189 calls 95.918 user 2.301 sys 99.991 real
idle: 94 calls 0.124 user 0.000 sys 33.697 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 504839 calls 2896.656 user 2.787 sys 2961.431 real
overall: 10783580160 mem 6902.992 user 47.118 sys 230.589 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory