Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/bc2fff43da4e678228947755c7c007/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/345e07031641f3739ef1e8a6665ff2/1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/345e07031641f3739ef1e8a6665ff2/1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/bc2fff43da4e678228947755c7c007/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:181000001, elapsed 4.8s, est remaining 90.4s, peak mem 3815MB, user 105.5s, sys 2.8s, output queue size 146
progress 10% @chr2:90000001, elapsed 8.7s, est remaining 78.1s, peak mem 4928MB, user 233.7s, sys 5.8s, output queue size 117
progress 15% @chr3:4000001, elapsed 13.8s, est remaining 78.5s, peak mem 8200MB, user 378.0s, sys 11.3s, output queue size 203
progress 20% @chr3:158000001, elapsed 17.6s, est remaining 70.3s, peak mem 8310MB, user 490.3s, sys 14.7s, output queue size 283
progress 25% @chr4:135000001, elapsed 20.7s, est remaining 62.0s, peak mem 8310MB, user 599.1s, sys 16.4s, output queue size 302
progress 30% @chr5:35000001, elapsed 23.2s, est remaining 54.1s, peak mem 8310MB, user 665.0s, sys 17.0s, output queue size 464
progress 35% @chr6:44000001, elapsed 27.3s, est remaining 50.7s, peak mem 8801MB, user 779.9s, sys 18.1s, output queue size 625
progress 40% @chr7:48000001, elapsed 32.1s, est remaining 48.2s, peak mem 10030MB, user 916.1s, sys 19.6s, output queue size 197
progress 45% @chr8:75000001, elapsed 36.6s, est remaining 44.7s, peak mem 10304MB, user 1057.5s, sys 21.1s, output queue size 357
progress 50% @chr7:140000001, elapsed 40.2s, est remaining 40.2s, peak mem 10304MB, user 1169.6s, sys 22.6s, output queue size 366
progress 55% @chr10:96000001, elapsed 44.4s, est remaining 36.3s, peak mem 10304MB, user 1304.6s, sys 23.6s, output queue size 348
progress 60% @chr11:130000001, elapsed 48.7s, est remaining 32.5s, peak mem 10304MB, user 1440.0s, sys 24.6s, output queue size 510
progress 65% @chr13:33000001, elapsed 53.1s, est remaining 28.6s, peak mem 10304MB, user 1553.3s, sys 25.4s, output queue size 672
progress 70% @chr14:71000001, elapsed 55.8s, est remaining 23.9s, peak mem 10304MB, user 1626.3s, sys 26.0s, output queue size 833
progress 75% @chr16:42000001, elapsed 60.2s, est remaining 20.1s, peak mem 10304MB, user 1784.9s, sys 27.1s, output queue size 461
progress 80% @chr18:13000001, elapsed 66.9s, est remaining 16.7s, peak mem 10304MB, user 1964.5s, sys 28.1s, output queue size 623
progress 85% @chr20:9000001, elapsed 72.9s, est remaining 12.9s, peak mem 10304MB, user 2159.9s, sys 29.2s, output queue size 785
progress 90% @chrX:30000001, elapsed 78.2s, est remaining 8.7s, peak mem 11123MB, user 2333.5s, sys 30.5s, output queue size 513
progress 95% @chrY:11000001, elapsed 81.6s, est remaining 4.3s, peak mem 11123MB, user 2431.6s, sys 31.3s, output queue size 675
progress 100% @chrX:67000001, elapsed 91.9s, est remaining 0.0s, peak mem 11123MB, user 2556.3s, sys 32.1s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 81150013433
reads: 1554117329
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1257.138 user 28.841 sys 1288.219 real
done: 1 calls 0.015 user 0.046 sys 0.071 real
exec_no_coor: 1 calls 0.008 user 0.008 sys 0.029 real
execute: 1 calls 0.005 user 0.002 sys 91.883 real
idle: 313 calls 0.154 user 0.001 sys 291.189 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 11663736832 mem 2557.233 user 32.346 sys 93.270 real