File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/43c92acc8042c6088ce4157f80a9d5/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4XR-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 5.3s, est remaining 100.6s, peak mem 3851MB, user 119.2s, sys 2.5s, output queue size 146
progress 10% @chr2:46000001, elapsed 9.5s, est remaining 85.7s, peak mem 4984MB, user 258.6s, sys 5.2s, output queue size 166
progress 15% @chr3:8000001, elapsed 13.4s, est remaining 76.0s, peak mem 6834MB, user 384.0s, sys 7.8s, output queue size 122
progress 20% @chr3:168000001, elapsed 16.9s, est remaining 67.4s, peak mem 6851MB, user 491.8s, sys 8.7s, output queue size 141
progress 25% @chr4:129000001, elapsed 20.0s, est remaining 59.9s, peak mem 6937MB, user 583.0s, sys 9.4s, output queue size 302
progress 30% @chr5:97000001, elapsed 22.4s, est remaining 52.3s, peak mem 7168MB, user 651.1s, sys 9.9s, output queue size 464
progress 35% @chr6:92000001, elapsed 26.0s, est remaining 48.3s, peak mem 7288MB, user 749.5s, sys 10.6s, output queue size 625
progress 40% @chr7:47000001, elapsed 30.1s, est remaining 45.1s, peak mem 7422MB, user 857.7s, sys 11.3s, output queue size 786
progress 45% @chr8:70000001, elapsed 34.5s, est remaining 42.1s, peak mem 7553MB, user 1007.2s, sys 12.3s, output queue size 356
progress 50% @chr9:102000001, elapsed 38.0s, est remaining 38.0s, peak mem 7697MB, user 1106.1s, sys 12.9s, output queue size 366
progress 55% @chr10:104000001, elapsed 42.7s, est remaining 34.9s, peak mem 7863MB, user 1244.4s, sys 13.7s, output queue size 527
progress 60% @chr11:65000001, elapsed 46.9s, est remaining 31.3s, peak mem 7874MB, user 1394.2s, sys 14.6s, output queue size 510
progress 65% @chr13:39000001, elapsed 51.1s, est remaining 27.5s, peak mem 7874MB, user 1499.8s, sys 15.5s, output queue size 672
progress 70% @chr14:20000001, elapsed 53.6s, est remaining 23.0s, peak mem 7890MB, user 1598.4s, sys 15.9s, output queue size 635
progress 75% @chr16:42000001, elapsed 58.5s, est remaining 19.5s, peak mem 7997MB, user 1741.2s, sys 16.8s, output queue size 461
progress 80% @chr18:9000001, elapsed 65.9s, est remaining 16.5s, peak mem 8183MB, user 1942.0s, sys 18.0s, output queue size 623
progress 85% @chr19:42000001, elapsed 72.3s, est remaining 12.8s, peak mem 8183MB, user 2144.3s, sys 19.1s, output queue size 785
progress 90% @chrX:36000001, elapsed 76.8s, est remaining 8.5s, peak mem 8261MB, user 2308.2s, sys 20.0s, output queue size 513
progress 95% @chrY:53000001, elapsed 80.1s, est remaining 4.2s, peak mem 8417MB, user 2388.1s, sys 20.4s, output queue size 675
progress 100% @chrX:67000001, elapsed 89.6s, est remaining 0.0s, peak mem 8426MB, user 2528.8s, sys 21.2s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 61364023637
reads: 1205609827
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 971.243 user 18.441 sys 990.475 real
done: 1 calls 0.330 user 0.019 sys 0.358 real
exec_no_coor: 1 calls 0.000 user 0.013 sys 0.022 real
execute: 1 calls 0.006 user 0.002 sys 89.625 real
idle: 295 calls 0.169 user 0.001 sys 266.539 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8835514368 mem 2530.879 user 21.646 sys 91.661 real