Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/33b8c34be7b42e0c78b1bbe3251224/1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/12fcf6c2112fcf01fac54250098025/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/12fcf6c2112fcf01fac54250098025/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/33b8c34be7b42e0c78b1bbe3251224/1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4XR-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:181000001, elapsed 4.3s, est remaining 82.0s, peak mem 3684MB, user 94.6s, sys 3.4s, output queue size 150
progress 10% @chr2:90000001, elapsed 7.6s, est remaining 68.1s, peak mem 4560MB, user 205.8s, sys 5.5s, output queue size 96
progress 15% @chr2:197000001, elapsed 10.8s, est remaining 61.0s, peak mem 6483MB, user 297.7s, sys 7.6s, output queue size 203
progress 20% @chr3:167000001, elapsed 13.5s, est remaining 54.0s, peak mem 6688MB, user 382.5s, sys 9.9s, output queue size 283
progress 25% @chr4:134000001, elapsed 15.9s, est remaining 47.8s, peak mem 6710MB, user 460.1s, sys 11.1s, output queue size 302
progress 30% @chr5:107000001, elapsed 17.9s, est remaining 41.7s, peak mem 6832MB, user 519.1s, sys 11.7s, output queue size 464
progress 35% @chr6:70000001, elapsed 20.6s, est remaining 38.2s, peak mem 6980MB, user 593.6s, sys 12.5s, output queue size 625
progress 40% @chr7:67000001, elapsed 23.7s, est remaining 35.6s, peak mem 7310MB, user 684.3s, sys 13.3s, output queue size 197
progress 45% @chr8:67000001, elapsed 27.2s, est remaining 33.2s, peak mem 7568MB, user 789.4s, sys 14.2s, output queue size 356
progress 50% @chr9:102000001, elapsed 30.1s, est remaining 30.1s, peak mem 7787MB, user 868.8s, sys 14.7s, output queue size 366
progress 55% @chr10:104000001, elapsed 33.5s, est remaining 27.4s, peak mem 7912MB, user 972.5s, sys 15.8s, output queue size 527
progress 60% @chr12:3000001, elapsed 36.5s, est remaining 24.4s, peak mem 7912MB, user 1081.3s, sys 16.7s, output queue size 510
progress 65% @chr12:123000001, elapsed 39.6s, est remaining 21.3s, peak mem 7912MB, user 1160.8s, sys 17.3s, output queue size 672
progress 70% @chr14:35000001, elapsed 41.5s, est remaining 17.8s, peak mem 7912MB, user 1230.6s, sys 17.9s, output queue size 635
progress 75% @chr16:41000001, elapsed 45.2s, est remaining 15.1s, peak mem 7912MB, user 1340.4s, sys 18.7s, output queue size 461
progress 80% @chr18:1, elapsed 50.7s, est remaining 12.7s, peak mem 7912MB, user 1482.9s, sys 20.0s, output queue size 623
progress 85% @chr20:25000001, elapsed 55.2s, est remaining 9.7s, peak mem 7912MB, user 1644.3s, sys 21.1s, output queue size 351
progress 90% @chrX:34000001, elapsed 58.5s, est remaining 6.5s, peak mem 7912MB, user 1745.1s, sys 21.9s, output queue size 513
progress 95% @chrY:53000001, elapsed 61.1s, est remaining 3.2s, peak mem 7912MB, user 1821.7s, sys 22.5s, output queue size 675
progress 100% @chrX:67000001, elapsed 68.4s, est remaining 0.0s, peak mem 7912MB, user 1924.0s, sys 23.3s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 61364023637
reads: 1205609827
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 968.484 user 20.767 sys 991.436 real
done: 1 calls 0.019 user 0.000 sys 0.026 real
exec_no_coor: 1 calls 0.005 user 0.005 sys 0.019 real
execute: 1 calls 0.007 user 0.003 sys 68.373 real
idle: 237 calls 0.149 user 0.001 sys 201.255 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8297295872 mem 1925.025 user 23.525 sys 69.694 real