Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/1f068e971203b5866e6eef9d81719d/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fd9d16d5f12b5a7d5c9a20f5f532db/659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/1f068e971203b5866e6eef9d81719d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fd9d16d5f12b5a7d5c9a20f5f532db/659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_bR4-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 5.1s, est remaining 96.8s, peak mem 4597MB, user 116.1s, sys 5.4s, output queue size 145
progress 10% @chr2:94000001, elapsed 9.7s, est remaining 87.7s, peak mem 6506MB, user 252.7s, sys 8.8s, output queue size 96
progress 15% @chr3:4000001, elapsed 14.3s, est remaining 81.3s, peak mem 9664MB, user 387.4s, sys 12.6s, output queue size 203
progress 20% @chr3:174000001, elapsed 18.1s, est remaining 72.3s, peak mem 10196MB, user 514.6s, sys 15.9s, output queue size 174
progress 25% @chr4:133000001, elapsed 21.3s, est remaining 63.8s, peak mem 10367MB, user 611.4s, sys 16.7s, output queue size 302
progress 30% @chr5:83000001, elapsed 24.1s, est remaining 56.3s, peak mem 10661MB, user 697.5s, sys 17.6s, output queue size 464
progress 35% @chr6:79000001, elapsed 27.8s, est remaining 51.6s, peak mem 11084MB, user 797.4s, sys 18.7s, output queue size 625
progress 40% @chr7:65000001, elapsed 31.8s, est remaining 47.7s, peak mem 11364MB, user 911.7s, sys 19.7s, output queue size 786
progress 45% @chr8:82000001, elapsed 37.2s, est remaining 45.4s, peak mem 11484MB, user 1052.8s, sys 20.7s, output queue size 948
progress 50% @chr9:87000001, elapsed 41.6s, est remaining 41.6s, peak mem 12066MB, user 1168.1s, sys 21.5s, output queue size 1110
progress 55% @chr10:101000001, elapsed 46.3s, est remaining 37.9s, peak mem 12306MB, user 1343.6s, sys 23.1s, output queue size 527
progress 60% @chr12:1000001, elapsed 50.7s, est remaining 33.8s, peak mem 12306MB, user 1478.0s, sys 23.9s, output queue size 689
progress 65% @chr11:118000001, elapsed 56.1s, est remaining 30.2s, peak mem 12306MB, user 1617.0s, sys 24.9s, output queue size 851
progress 70% @chr12:49000001, elapsed 59.1s, est remaining 25.3s, peak mem 12306MB, user 1725.3s, sys 25.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 64.0s, est remaining 21.3s, peak mem 12506MB, user 1856.8s, sys 26.5s, output queue size 995
progress 80% @chr18:9000001, elapsed 71.0s, est remaining 17.8s, peak mem 12609MB, user 2045.7s, sys 27.7s, output queue size 1157
progress 85% @chr19:47000001, elapsed 77.9s, est remaining 13.7s, peak mem 12638MB, user 2296.0s, sys 29.5s, output queue size 785
progress 90% @chrX:38000001, elapsed 81.8s, est remaining 9.1s, peak mem 12985MB, user 2422.5s, sys 30.3s, output queue size 947
progress 95% @chrY:55000001, elapsed 84.4s, est remaining 4.4s, peak mem 13010MB, user 2488.8s, sys 31.1s, output queue size 1109
progress 100% @chr22:23000001, elapsed 92.7s, est remaining 0.0s, peak mem 13178MB, user 2644.3s, sys 32.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 83203675103
reads: 1632923217
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1287.813 user 28.606 sys 1316.288 real
done: 1 calls 0.020 user 0.010 sys 0.035 real
exec_no_coor: 1 calls 0.000 user 0.006 sys 0.009 real
execute: 1 calls 0.005 user 0.001 sys 92.705 real
idle: 233 calls 0.167 user 0.001 sys 226.313 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 13818351616 mem 2645.338 user 32.316 sys 94.081 real