File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/ec06b99e839853020b8fb4ae9309a9/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_6TL-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 2.8s, est remaining 53.0s, peak mem 2254MB, user 66.8s, sys 2.1s, output queue size 47
progress 10% @chr2:70000001, elapsed 5.1s, est remaining 46.1s, peak mem 2649MB, user 137.5s, sys 3.2s, output queue size 203
progress 15% @chr2:201000001, elapsed 7.3s, est remaining 41.6s, peak mem 3735MB, user 208.8s, sys 4.8s, output queue size 122
progress 20% @chr3:176000001, elapsed 9.2s, est remaining 36.8s, peak mem 3765MB, user 265.8s, sys 5.4s, output queue size 174
progress 25% @chr4:124000001, elapsed 11.1s, est remaining 33.3s, peak mem 3878MB, user 321.5s, sys 5.9s, output queue size 302
progress 30% @chr5:105000001, elapsed 12.6s, est remaining 29.5s, peak mem 4100MB, user 368.4s, sys 6.4s, output queue size 464
progress 35% @chr6:63000001, elapsed 14.8s, est remaining 27.5s, peak mem 4116MB, user 431.6s, sys 7.1s, output queue size 625
progress 40% @chr7:47000001, elapsed 17.1s, est remaining 25.6s, peak mem 4641MB, user 503.3s, sys 7.9s, output queue size 194
progress 45% @chr8:60000001, elapsed 20.1s, est remaining 24.5s, peak mem 5202MB, user 584.9s, sys 8.9s, output queue size 204
progress 50% @chr8:143000001, elapsed 24.3s, est remaining 24.3s, peak mem 6595MB, user 694.1s, sys 10.1s, output queue size 366
progress 55% @chr10:73000001, elapsed 27.0s, est remaining 22.1s, peak mem 6595MB, user 789.8s, sys 11.3s, output queue size 348
progress 60% @chr12:3000001, elapsed 29.0s, est remaining 19.3s, peak mem 6595MB, user 864.3s, sys 12.2s, output queue size 415
progress 65% @chr13:31000001, elapsed 31.5s, est remaining 17.0s, peak mem 6618MB, user 939.6s, sys 13.1s, output queue size 474
progress 70% @chr14:79000001, elapsed 33.0s, est remaining 14.1s, peak mem 6618MB, user 984.4s, sys 13.6s, output queue size 635
progress 75% @chr16:42000001, elapsed 35.5s, est remaining 11.8s, peak mem 6618MB, user 1055.8s, sys 14.2s, output queue size 461
progress 80% @chr18:13000001, elapsed 38.9s, est remaining 9.7s, peak mem 6640MB, user 1144.2s, sys 15.0s, output queue size 623
progress 85% @chr20:18000001, elapsed 41.3s, est remaining 7.3s, peak mem 6746MB, user 1226.8s, sys 15.7s, output queue size 785
progress 90% @chrX:34000001, elapsed 43.4s, est remaining 4.8s, peak mem 6746MB, user 1303.1s, sys 16.4s, output queue size 513
progress 95% @chrY:52000001, elapsed 45.1s, est remaining 2.4s, peak mem 6746MB, user 1351.4s, sys 16.9s, output queue size 675
progress 100% @chrX:67000001, elapsed 50.2s, est remaining 0.0s, peak mem 6746MB, user 1406.1s, sys 17.4s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 44707427019
reads: 902411031
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 712.716 user 15.019 sys 729.119 real
done: 1 calls 0.005 user 0.009 sys 0.023 real
exec_no_coor: 1 calls 0.007 user 0.000 sys 0.012 real
execute: 1 calls 0.004 user 0.001 sys 50.182 real
idle: 179 calls 0.117 user 0.001 sys 161.625 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7073886208 mem 1407.059 user 17.566 sys 51.441 real