File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/8e9e1e9382016bd79ff460246239e2/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXlLECFC/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXlLECFC/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXlLECFC/chr19_15162349-15162662.bed.gz.tbi
[2026-06-06T01:01:44.431733Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-06T01:01:44.436579Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-06T01:01:44.436592Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-06T01:01:44.436596Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-06T01:01:44.436601Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXlLECFC'
[2026-06-06T01:01:44.436605Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-06T01:01:44.436610Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-06T01:01:44.436613Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-06T01:01:44.436617Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-06T01:01:44.436621Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-06T01:01:44.436625Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-06T01:01:44.436628Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-06T01:01:44.436632Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-06T01:01:44.436636Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-06T01:01:44.437114Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-06T01:01:44.437227Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-06T01:01:44.443107Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-06T01:01:44.443695Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-06T01:01:44.443924Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-06T01:01:44.444316Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-06T01:01:44.444575Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.444992Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445086Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445158Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445275Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445339Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445455Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445516Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445634Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.445823Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.446171Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.446284Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.446383Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.446504Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.446742Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.447209Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.448861Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.449253Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-06T01:01:44.449580Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.449884Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450079Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450153Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450267Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450341Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450451Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450513Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450629Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450694Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450806Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.450871Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451198Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451435Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451551Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451637Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451821Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451893Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452011Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452077Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452198Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452263Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452378Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452459Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452688Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453070Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453754Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453821Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453961Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454027Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454208Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454429Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454892Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454960Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455072Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455135Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455249Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455310Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455421Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455486Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455595Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455662Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455771Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455832Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.456201Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.456564Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.456674Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.456741Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.472831Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.473184Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.473394Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.474007Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.474178Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.474355Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.474452Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.474831Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.475035Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.475237Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.476764Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.477327Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.478102Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.478286Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.478966Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-06T01:01:44.479156Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.480285Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.481998Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-06T01:01:44.482557Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.484145Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.486498Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-06T01:01:44.489644Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-06T01:01:44.492292Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-06T01:01:44.496958Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-06T01:01:44.499755Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-06T01:01:44.500757Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-06T01:01:44.500828Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-06T01:01:44.564872Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.565505Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.568392Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-06T01:01:44.629468Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.630177Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.632802Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-06T01:01:47.350758Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:47.351522Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:01:47.354054Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-06T01:01:47.383591Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:47.384305Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:01:47.386945Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-06T01:02:32.455356Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:32.456774Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:02:32.459428Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-06T01:02:32.488682Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:32.489318Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:02:32.491789Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-06T01:02:48.207223Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:48.208498Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:48.211478Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-06T01:02:58.425042Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:58.426273Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-06T01:02:58.429126Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-06T01:02:58.891416Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:58.892163Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:58.894748Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-06T01:02:58.956182Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:58.956853Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:58.959820Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-06T01:02:59.020872Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.021555Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.023996Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-06T01:02:59.053411Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.054083Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.056392Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-06T01:02:59.118085Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.118734Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-06T01:02:59.121430Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-06T01:03:12.642107Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:12.643324Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:03:12.646022Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-06T01:03:12.707633Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:12.708289Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:03:12.710874Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-06T01:03:12.772140Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:12.772736Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:03:12.775160Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-06T01:03:20.342650Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:20.343341Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-06T01:03:20.346137Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-06T01:03:23.815408Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:23.816122Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-06T01:03:23.818985Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-06T01:03:23.880414Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:23.881068Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:03:23.883954Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-06T01:03:30.299156Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:30.299866Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:03:30.302545Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-06T01:03:33.371140Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:33.371839Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:33.374720Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-06T01:03:33.435986Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:33.436627Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:03:33.439445Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-06T01:03:51.610284Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.611454Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.613943Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-06T01:03:51.675460Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.676090Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.678577Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-06T01:03:51.740053Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.740652Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.742969Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-06T01:03:51.772451Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.773050Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.775148Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-06T01:03:51.804872Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.805431Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:51.808230Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-06T01:03:54.274244Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:54.274905Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:54.277931Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-06T01:04:15.894868Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:15.895956Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-06T01:04:15.898724Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-06T01:04:17.363180Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:17.363839Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:04:17.366706Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-06T01:04:17.427743Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:17.428296Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:04:17.430880Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-06T01:04:22.693318Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:22.693891Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:04:22.696575Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-06T01:04:22.757962Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:22.758483Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-06T01:04:22.760944Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-06T01:04:45.280555Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:45.281816Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:45.284708Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-06T01:04:45.345831Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:45.346372Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:04:45.349043Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-06T01:04:47.966623Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:47.967194Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:47.970392Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-06T01:05:14.587861Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:14.589099Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:14.592021Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-06T01:05:24.264883Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.265435Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.268419Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-06T01:05:24.329709Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.330252Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.332831Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-06T01:05:24.394328Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.394844Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.397376Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-06T01:05:24.458863Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.459408Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.461771Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-06T01:05:24.523497Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.523989Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.526684Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-06T01:05:24.738433Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.738933Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.741735Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-06T01:05:24.802964Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.803417Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.806273Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-06T01:05:24.867546Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.868028Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.870710Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-06T01:05:24.900001Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.900445Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.902921Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-06T01:05:24.964469Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.964917Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.967422Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-06T01:05:25.029064Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.029549Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.032140Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-06T01:05:25.094133Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.094568Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.097105Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-06T01:05:25.126529Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.126943Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.129508Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-06T01:05:25.190975Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:27.911246Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:27.911731Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-06T01:05:27.914620Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-06T01:05:27.975844Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:32.950625Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:32.951068Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:32.953751Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-06T01:05:33.015185Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:34.782743Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:34.783196Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:05:34.786080Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-06T01:05:34.815126Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:30.335540Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:30.336731Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:06:30.339209Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-06T01:06:30.400656Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:04.325572Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:04.326538Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:07:04.328940Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-06T01:07:04.390416Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:59.374589Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:59.376003Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:07:59.378617Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-06T01:07:59.440173Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.666651Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.667947Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.670567Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-06T01:09:35.731968Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.732221Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.732353Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.732721Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.733004Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.736282Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-06T01:09:35.737353Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-06T01:09:35.738260Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-06T01:09:35.766026Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.766096Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.766308Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.766604Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.768885Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.770522Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-06T01:09:35.800845Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-06T01:09:35.802551Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.834437Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.834658Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:09:35.836807Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-06T01:09:35.866594Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:48.035906Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-06T01:10:03.011135Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-06T01:10:03.011135Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] 
[2026-06-06T01:10:03.011135Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-06T01:10:03.011192Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] 
[2026-06-06T01:10:03.011199Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-06T01:10:03.011206Z] [nf-978e9e1e9382016bd79ff460246239e2-26f10-4pmdr] [601_1] [WorkflowRunner] Elapsed time for full workflow: 498 sec