Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/e3dcb66ce0194dadb6cca1fd15a9b9/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/17fccdf819f8ec4c552cea4ecfb06f/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/e3dcb66ce0194dadb6cca1fd15a9b9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/17fccdf819f8ec4c552cea4ecfb06f/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_7OW-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 4.3s, est remaining 82.6s, peak mem 3449MB, user 98.4s, sys 4.0s, output queue size 150
progress 10% @chr2:84000001, elapsed 7.8s, est remaining 70.5s, peak mem 4787MB, user 207.4s, sys 6.9s, output queue size 117
progress 15% @chr2:232000001, elapsed 11.6s, est remaining 65.8s, peak mem 7035MB, user 321.2s, sys 8.9s, output queue size 203
progress 20% @chr2:113000001, elapsed 14.8s, est remaining 59.2s, peak mem 7318MB, user 418.2s, sys 11.4s, output queue size 283
progress 25% @chr4:129000001, elapsed 17.6s, est remaining 52.7s, peak mem 7318MB, user 506.9s, sys 12.2s, output queue size 302
progress 30% @chr5:83000001, elapsed 19.8s, est remaining 46.2s, peak mem 7318MB, user 567.8s, sys 12.9s, output queue size 464
progress 35% @chr6:70000001, elapsed 23.1s, est remaining 42.8s, peak mem 7318MB, user 661.1s, sys 13.5s, output queue size 625
progress 40% @chr7:66000001, elapsed 26.8s, est remaining 40.3s, peak mem 7798MB, user 755.6s, sys 14.3s, output queue size 786
progress 45% @chr8:79000001, elapsed 31.3s, est remaining 38.3s, peak mem 8274MB, user 898.4s, sys 15.5s, output queue size 948
progress 50% @chr9:102000001, elapsed 34.6s, est remaining 34.6s, peak mem 8341MB, user 997.0s, sys 16.2s, output queue size 366
progress 55% @chr10:101000001, elapsed 38.7s, est remaining 31.6s, peak mem 8433MB, user 1124.0s, sys 17.3s, output queue size 527
progress 60% @chr12:1000001, elapsed 42.5s, est remaining 28.3s, peak mem 8439MB, user 1245.2s, sys 18.1s, output queue size 510
progress 65% @chr13:24000001, elapsed 46.5s, est remaining 25.1s, peak mem 8439MB, user 1355.4s, sys 18.8s, output queue size 672
progress 70% @chr14:85000001, elapsed 49.0s, est remaining 21.0s, peak mem 8439MB, user 1427.4s, sys 19.2s, output queue size 833
progress 75% @chr16:41000001, elapsed 54.0s, est remaining 18.0s, peak mem 8439MB, user 1569.7s, sys 20.7s, output queue size 995
progress 80% @chr18:9000001, elapsed 61.0s, est remaining 15.2s, peak mem 8569MB, user 1788.0s, sys 22.7s, output queue size 623
progress 85% @chr20:23000001, elapsed 66.6s, est remaining 11.8s, peak mem 8569MB, user 1964.3s, sys 23.7s, output queue size 785
progress 90% @chrX:38000001, elapsed 70.0s, est remaining 7.8s, peak mem 8569MB, user 2066.7s, sys 24.5s, output queue size 947
progress 95% @chrY:54000001, elapsed 72.1s, est remaining 3.8s, peak mem 8608MB, user 2156.4s, sys 25.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 79.7s, est remaining 0.0s, peak mem 8608MB, user 2260.5s, sys 25.8s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 66871250911
reads: 1299975145
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1047.967 user 21.743 sys 1070.769 real
done: 1 calls 0.038 user 0.020 sys 0.060 real
exec_no_coor: 1 calls 0.006 user 0.006 sys 0.020 real
execute: 1 calls 0.004 user 0.001 sys 79.749 real
idle: 240 calls 0.146 user 0.001 sys 214.752 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9026506752 mem 2261.622 user 26.037 sys 81.029 real