cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_d0M-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_d0M-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 7.8s, est remaining 149.1s, peak mem 5349MB, user 206.2s, sys 6.5s, output queue size 175
progress 10% @chr2:21013160, elapsed 14.9s, est remaining 134.0s, peak mem 6095MB, user 395.8s, sys 8.5s, output queue size 657
progress 15% @chr2:189666133, elapsed 24.4s, est remaining 138.2s, peak mem 7256MB, user 654.0s, sys 11.3s, output queue size 288
progress 20% @chr3:98592949, elapsed 33.1s, est remaining 132.5s, peak mem 7582MB, user 892.2s, sys 13.1s, output queue size 437
progress 25% @chr4:88462135, elapsed 39.8s, est remaining 119.3s, peak mem 7601MB, user 1070.1s, sys 14.5s, output queue size 89
progress 30% @chr5:147632680, elapsed 45.9s, est remaining 107.1s, peak mem 7601MB, user 1233.5s, sys 15.8s, output queue size 207
progress 35% @chr6:132323931, elapsed 54.4s, est remaining 101.1s, peak mem 7601MB, user 1459.4s, sys 17.4s, output queue size 638
progress 40% @chr7:128842575, elapsed 64.6s, est remaining 96.9s, peak mem 8246MB, user 1728.3s, sys 19.3s, output queue size 551
progress 45% @chr9:2102910, elapsed 76.3s, est remaining 93.3s, peak mem 9186MB, user 2060.2s, sys 21.3s, output queue size 1477
progress 50% @chr10:32925871, elapsed 85.9s, est remaining 85.9s, peak mem 9323MB, user 2327.6s, sys 23.5s, output queue size 108
progress 55% @chr11:48324941, elapsed 93.6s, est remaining 76.6s, peak mem 9323MB, user 2532.3s, sys 24.7s, output queue size 15
progress 60% @chr12:25089614, elapsed 103.9s, est remaining 69.2s, peak mem 9323MB, user 2812.9s, sys 26.7s, output queue size 754
progress 65% @chr13:49544737, elapsed 112.6s, est remaining 60.6s, peak mem 9323MB, user 3051.6s, sys 28.4s, output queue size 570
progress 70% @chr15:43105942, elapsed 120.2s, est remaining 51.5s, peak mem 9323MB, user 3256.3s, sys 29.9s, output queue size 454
progress 75% @chr16:30985659, elapsed 128.9s, est remaining 43.0s, peak mem 9323MB, user 3496.0s, sys 31.7s, output queue size 32
progress 80% @chr17:42614260, elapsed 137.8s, est remaining 34.4s, peak mem 9323MB, user 3740.7s, sys 33.4s, output queue size 697
progress 85% @chr19:5687753, elapsed 144.9s, est remaining 25.6s, peak mem 9323MB, user 3932.9s, sys 34.5s, output queue size 407
progress 90% @chr19:55481201, elapsed 151.6s, est remaining 16.8s, peak mem 9323MB, user 4113.8s, sys 35.5s, output queue size 89
progress 95% @chr22:36991481, elapsed 159.7s, est remaining 8.4s, peak mem 9323MB, user 4335.3s, sys 37.0s, output queue size 855
progress 100% @chr6_GL000251v2_alt:3946951, elapsed 166.9s, est remaining 0.0s, peak mem 9323MB, user 4532.0s, sys 38.2s, output queue size 6
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 62651370106
reads: 1242257820
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2407.552 user 29.424 sys 2521.999 real
done: 1 calls 0.409 user 0.308 sys 0.722 real
execute: 1 calls 0.005 user 0.002 sys 166.942 real
fetch_reads: 208647 calls 203.528 user 0.484 sys 208.932 real
fetch_ref: 207055 calls 0.991 user 0.902 sys 2.119 real
fetch_vcf: 207055 calls 81.393 user 2.224 sys 85.541 real
idle: 103 calls 0.117 user 0.000 sys 31.868 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 442736 calls 2171.756 user 3.638 sys 2235.422 real
overall: 9776742400 mem 5045.254 user 39.432 sys 168.531 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory