cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119986928, elapsed 3.0s, est remaining 56.1s, peak mem 3229MB, user 81.3s, sys 2.9s, output queue size 165
progress 10% @chr2:21001730, elapsed 5.4s, est remaining 48.5s, peak mem 3409MB, user 149.7s, sys 3.6s, output queue size 659
progress 15% @chr2:189666133, elapsed 8.0s, est remaining 45.5s, peak mem 3603MB, user 223.9s, sys 4.4s, output queue size 288
progress 20% @chr3:98788036, elapsed 10.8s, est remaining 43.1s, peak mem 3627MB, user 301.7s, sys 5.2s, output queue size 422
progress 25% @chr4:88499926, elapsed 13.1s, est remaining 39.2s, peak mem 3657MB, user 365.4s, sys 6.0s, output queue size 88
progress 30% @chr5:147644058, elapsed 15.1s, est remaining 35.3s, peak mem 3697MB, user 423.9s, sys 6.6s, output queue size 209
progress 35% @chr6:131874268, elapsed 18.3s, est remaining 34.0s, peak mem 3946MB, user 512.6s, sys 7.4s, output queue size 625
progress 40% @chr7:128479158, elapsed 20.9s, est remaining 31.3s, peak mem 4018MB, user 583.0s, sys 8.1s, output queue size 65
progress 45% @chr9:2070418, elapsed 23.6s, est remaining 28.8s, peak mem 4089MB, user 659.9s, sys 8.8s, output queue size 148
progress 50% @chr10:33221719, elapsed 26.2s, est remaining 26.2s, peak mem 4106MB, user 732.9s, sys 9.4s, output queue size 94
progress 55% @chr11:48136039, elapsed 28.6s, est remaining 23.4s, peak mem 4106MB, user 799.6s, sys 10.1s, output queue size 41
progress 60% @chr12:22527721, elapsed 31.4s, est remaining 21.0s, peak mem 4106MB, user 880.7s, sys 10.8s, output queue size 700
progress 65% @chr13:49267490, elapsed 34.2s, est remaining 18.4s, peak mem 4106MB, user 959.3s, sys 11.4s, output queue size 59
progress 70% @chr15:43037773, elapsed 36.6s, est remaining 15.7s, peak mem 4106MB, user 1026.4s, sys 12.1s, output queue size 454
progress 75% @chr16:30949290, elapsed 39.2s, est remaining 13.1s, peak mem 4106MB, user 1099.5s, sys 12.7s, output queue size 31
progress 80% @chr17:42697554, elapsed 42.5s, est remaining 10.6s, peak mem 4121MB, user 1194.4s, sys 13.6s, output queue size 705
progress 85% @chr19:5757843, elapsed 45.4s, est remaining 8.0s, peak mem 4121MB, user 1274.7s, sys 14.2s, output queue size 406
progress 90% @chr19:55931993, elapsed 48.2s, est remaining 5.4s, peak mem 4121MB, user 1355.8s, sys 14.9s, output queue size 99
progress 95% @chr22:36480575, elapsed 50.9s, est remaining 2.7s, peak mem 4137MB, user 1432.0s, sys 15.6s, output queue size 26
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 52.7s, est remaining 0.0s, peak mem 4142MB, user 1481.7s, sys 16.0s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 34425376535
reads: 539909111
contig: 201779 intervals 37922265 bases
advance: 208647 calls 803.737 user 10.752 sys 841.909 real
done: 1 calls 0.487 user 0.239 sys 0.725 real
execute: 1 calls 0.005 user 0.001 sys 52.674 real
fetch_reads: 208647 calls 46.564 user 0.114 sys 51.238 real
fetch_ref: 206161 calls 0.684 user 0.740 sys 1.513 real
fetch_vcf: 206161 calls 77.292 user 1.875 sys 81.680 real
idle: 92 calls 0.108 user 0.000 sys 32.004 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 244189 calls 613.435 user 2.001 sys 630.534 real
overall: 4344242176 mem 1598.820 user 16.661 sys 54.168 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory