File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/80a0c77bde9f120529b48c6e0780ba/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_8DV-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 3.3s, est remaining 62.8s, peak mem 2333MB, user 72.0s, sys 1.9s, output queue size 146
progress 10% @chr2:91000001, elapsed 6.3s, est remaining 56.8s, peak mem 3586MB, user 161.3s, sys 3.3s, output queue size 172
progress 15% @chr2:237000001, elapsed 8.8s, est remaining 50.1s, peak mem 4153MB, user 249.1s, sys 6.3s, output queue size 188
progress 20% @chr3:136000001, elapsed 11.0s, est remaining 43.8s, peak mem 4153MB, user 313.2s, sys 7.3s, output queue size 283
progress 25% @chr4:118000001, elapsed 12.7s, est remaining 38.2s, peak mem 4153MB, user 370.7s, sys 8.1s, output queue size 302
progress 30% @chr5:104000001, elapsed 14.0s, est remaining 32.7s, peak mem 4153MB, user 411.0s, sys 8.5s, output queue size 464
progress 35% @chr6:79000001, elapsed 16.0s, est remaining 29.7s, peak mem 4153MB, user 471.1s, sys 9.2s, output queue size 106
progress 40% @chr7:41000001, elapsed 18.1s, est remaining 27.1s, peak mem 4249MB, user 531.2s, sys 9.8s, output queue size 195
progress 45% @chr8:70000001, elapsed 20.5s, est remaining 25.1s, peak mem 4378MB, user 602.0s, sys 10.6s, output queue size 204
progress 50% @chr9:89000001, elapsed 22.8s, est remaining 22.8s, peak mem 4696MB, user 672.7s, sys 11.2s, output queue size 187
progress 55% @chr10:115000001, elapsed 25.5s, est remaining 20.8s, peak mem 4798MB, user 756.3s, sys 11.9s, output queue size 253
progress 60% @chr11:94000001, elapsed 27.9s, est remaining 18.6s, peak mem 4798MB, user 831.8s, sys 12.6s, output queue size 312
progress 65% @chr13:30000001, elapsed 30.2s, est remaining 16.3s, peak mem 4798MB, user 908.5s, sys 13.3s, output queue size 138
progress 70% @chr14:37000001, elapsed 31.6s, est remaining 13.5s, peak mem 4798MB, user 946.9s, sys 13.7s, output queue size 299
progress 75% @chr16:42000001, elapsed 34.0s, est remaining 11.3s, peak mem 4798MB, user 1011.5s, sys 14.1s, output queue size 461
progress 80% @chr18:10000001, elapsed 38.3s, est remaining 9.6s, peak mem 4806MB, user 1129.9s, sys 15.0s, output queue size 623
progress 85% @chr19:52000001, elapsed 42.2s, est remaining 7.4s, peak mem 4881MB, user 1251.3s, sys 15.9s, output queue size 351
progress 90% @chrX:30000001, elapsed 44.6s, est remaining 5.0s, peak mem 4881MB, user 1349.5s, sys 16.5s, output queue size 78
progress 95% @chrY:53000001, elapsed 46.4s, est remaining 2.4s, peak mem 4929MB, user 1395.3s, sys 16.8s, output queue size 240
progress 100% @chr22:23000001, elapsed 51.7s, est remaining 0.0s, peak mem 4953MB, user 1446.7s, sys 17.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 45110700362
reads: 909143983
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 713.058 user 14.912 sys 730.164 real
done: 1 calls 0.002 user 0.008 sys 0.015 real
exec_no_coor: 1 calls 0.000 user 0.012 sys 0.027 real
execute: 1 calls 0.000 user 0.010 sys 51.700 real
idle: 192 calls 0.124 user 0.000 sys 168.079 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5194211328 mem 1447.731 user 17.188 sys 52.922 real