cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_3LU-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 37.4s, est remaining 710.4s, peak mem 6738MB, user 911.3s, sys 10.7s, output queue size 44
progress 10% @chr2:17000001, elapsed 71.3s, est remaining 642.0s, peak mem 10400MB, user 1997.4s, sys 15.7s, output queue size 56
progress 15% @chr3:4000001, elapsed 107.9s, est remaining 611.5s, peak mem 12862MB, user 3019.9s, sys 20.3s, output queue size 203
progress 20% @chr2:222000001, elapsed 135.5s, est remaining 542.2s, peak mem 12940MB, user 3859.3s, sys 23.6s, output queue size 364
progress 25% @chr4:124000001, elapsed 162.4s, est remaining 487.2s, peak mem 13011MB, user 4730.1s, sys 29.1s, output queue size 302
progress 30% @chr5:94000001, elapsed 182.4s, est remaining 425.5s, peak mem 13104MB, user 5334.1s, sys 31.6s, output queue size 464
progress 35% @chr6:91000001, elapsed 208.5s, est remaining 387.3s, peak mem 13133MB, user 6048.2s, sys 34.4s, output queue size 625
progress 40% @chr7:56000001, elapsed 242.0s, est remaining 363.0s, peak mem 13554MB, user 7033.0s, sys 38.3s, output queue size 195
progress 45% @chr8:7000001, elapsed 276.4s, est remaining 337.8s, peak mem 13647MB, user 8090.0s, sys 42.0s, output queue size 204
progress 50% @chr9:33000001, elapsed 304.9s, est remaining 304.9s, peak mem 14115MB, user 8874.2s, sys 45.0s, output queue size 366
progress 55% @chr10:118000001, elapsed 339.5s, est remaining 277.8s, peak mem 14582MB, user 9864.7s, sys 48.8s, output queue size 527
progress 60% @chr12:1000001, elapsed 375.3s, est remaining 250.2s, peak mem 14870MB, user 10957.8s, sys 52.4s, output queue size 510
progress 65% @chr12:111000001, elapsed 409.7s, est remaining 220.6s, peak mem 14870MB, user 11870.5s, sys 55.6s, output queue size 672
progress 70% @chr14:78000001, elapsed 430.3s, est remaining 184.4s, peak mem 14888MB, user 12749.4s, sys 59.1s, output queue size 827
progress 75% @chr16:42000001, elapsed 473.1s, est remaining 157.7s, peak mem 15285MB, user 13743.0s, sys 62.5s, output queue size 989
progress 80% @chr18:13000001, elapsed 530.8s, est remaining 132.7s, peak mem 15353MB, user 15286.3s, sys 67.8s, output queue size 1151
progress 85% @chr19:55000001, elapsed 577.4s, est remaining 101.9s, peak mem 15372MB, user 17269.8s, sys 74.3s, output queue size 351
progress 90% @chrX:36000001, elapsed 610.2s, est remaining 67.8s, peak mem 15433MB, user 18204.3s, sys 77.6s, output queue size 513
progress 95% @chrY:55000001, elapsed 627.9s, est remaining 33.0s, peak mem 15596MB, user 18639.3s, sys 79.3s, output queue size 675
progress 100% @chr22:23000001, elapsed 679.5s, est remaining 0.0s, peak mem 15596MB, user 19541.4s, sys 82.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 77410294291
output file size: 117648496926
reads: 1436635500
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.022 real
ReadQualCal::delayed_init: 1 calls 0.000 user 0.000 sys 0.025 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1665.062 user 25.667 sys 1725.532 real
done: 1 calls 0.526 user 0.306 sys 0.837 real
exec_no_coor: 1 calls 0.012 user 0.004 sys 0.035 real
execute: 1 calls 0.002 user 0.000 sys 680.706 real
fetch: 3219323 calls 97.005 user 0.630 sys 132.023 real
fetch_reads: 3219322 calls 329.558 user 1.200 sys 333.185 real
fetch_ref: 1991170 calls 8.142 user 1.286 sys 9.169 real
fetch_vcf: 1991170 calls 99.932 user 1.775 sys 103.857 real
idle: 80606 calls 39.699 user 0.579 sys 1200.602 real
init: 1 calls 0.006 user 0.000 sys 0.031 real
update: 2359802 calls 4254.316 user 4.407 sys 4420.797 real
write: 3219323 calls 14976.631 user 43.339 sys 15139.041 real
overall: 16354164736 mem 19607.787 user 118.801 sys 683.209 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.043 real
done: 1 calls 0.062 user 0.018 sys 0.079 real
idle: 61 calls 0.002 user 0.000 sys 31.321 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.083 user 0.047 sys 1.052 real