cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:173000001, elapsed 7.5s, est remaining 142.7s, peak mem 2437MB, user 168.6s, sys 1.7s, output queue size 146
progress 10% @chr2:46000001, elapsed 13.3s, est remaining 120.1s, peak mem 3213MB, user 367.6s, sys 2.8s, output queue size 117
progress 15% @chr3:17000001, elapsed 19.7s, est remaining 111.4s, peak mem 3701MB, user 562.5s, sys 4.0s, output queue size 122
progress 20% @chr3:165000001, elapsed 25.2s, est remaining 100.8s, peak mem 3756MB, user 727.0s, sys 4.5s, output queue size 283
progress 25% @chr4:124000001, elapsed 30.0s, est remaining 89.9s, peak mem 3820MB, user 882.5s, sys 5.1s, output queue size 302
progress 30% @chr5:81000001, elapsed 33.6s, est remaining 78.5s, peak mem 3820MB, user 989.0s, sys 5.5s, output queue size 464
progress 35% @chr6:56000001, elapsed 37.9s, est remaining 70.5s, peak mem 3946MB, user 1109.4s, sys 5.9s, output queue size 625
progress 40% @chr7:66000001, elapsed 44.1s, est remaining 66.1s, peak mem 4231MB, user 1283.7s, sys 6.6s, output queue size 786
progress 45% @chr8:70000001, elapsed 51.7s, est remaining 63.2s, peak mem 4692MB, user 1531.3s, sys 7.6s, output queue size 204
progress 50% @chr9:87000001, elapsed 56.9s, est remaining 56.9s, peak mem 4856MB, user 1657.5s, sys 8.0s, output queue size 366
progress 55% @chr10:99000001, elapsed 63.4s, est remaining 51.8s, peak mem 4956MB, user 1850.1s, sys 8.7s, output queue size 527
progress 60% @chr11:101000001, elapsed 69.4s, est remaining 46.3s, peak mem 5090MB, user 2028.2s, sys 9.4s, output queue size 647
progress 65% @chr13:24000001, elapsed 76.1s, est remaining 41.0s, peak mem 5156MB, user 2227.7s, sys 10.0s, output queue size 809
progress 70% @chr14:71000001, elapsed 80.4s, est remaining 34.4s, peak mem 5175MB, user 2389.4s, sys 10.5s, output queue size 827
progress 75% @chr16:41000001, elapsed 88.2s, est remaining 29.4s, peak mem 5197MB, user 2602.0s, sys 10.9s, output queue size 989
progress 80% @chr18:25000001, elapsed 98.8s, est remaining 24.7s, peak mem 5278MB, user 2877.9s, sys 11.6s, output queue size 1151
progress 85% @chr20:33000001, elapsed 109.1s, est remaining 19.3s, peak mem 5408MB, user 3163.8s, sys 12.4s, output queue size 1313
progress 90% @chrX:42000001, elapsed 117.3s, est remaining 13.0s, peak mem 5557MB, user 3511.6s, sys 13.2s, output queue size 513
progress 95% @chrY:52000001, elapsed 121.2s, est remaining 6.4s, peak mem 5591MB, user 3636.7s, sys 13.7s, output queue size 675
progress 100% @chr15:88000001, elapsed 148.9s, est remaining 0.0s, peak mem 5656MB, user 3846.2s, sys 14.2s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 41196981261
reads: 815252332
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 666.363 user 11.846 sys 677.988 real
done: 1 calls 0.033 user 0.000 sys 0.042 real
exec_no_coor: 1 calls 0.006 user 0.006 sys 0.026 real
execute: 1 calls 0.002 user 0.001 sys 149.214 real
idle: 823 calls 0.163 user 0.011 sys 793.218 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5931085824 mem 3848.271 user 14.509 sys 150.407 real