File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/7cf2e7eae8243fbfabf4878172e783/.command.log
Size
2.9 KB
Task
DAQ:SAMTOOLS_MERGE (1136_5TB-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/2ca7b042da08ba113d008d97666ebe/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/ec31b3802ddd2d281b379c5aebdcc6/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/e55fac4149d69f6d32534ca3bc6896/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/c815adc9301632bf354a6e10fda885/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/47e6060a15a4923b56721bcd708db9/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/742bd5d17c5db9f594f11a96ab1232/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/78c6558ee08737e5b5fdd30bf77964/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/07fc99b68a43038d6e315fae24338c/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/a77233981eab307fe9a8efd186d6a5/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/d1bda9eac944abd9a18cc2e0535a9c/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2c5c73f31ab94b5b026bc377ebb91e/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/7cf2e7eae8243fbfabf4878172e783/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/6fb13515c55188d9f8c6c77c7adf09/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3df0b242cec44bd2891fa1826c4746/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/7b63bfb894987fd29662942cb3e6fa/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/1e650a49e224bc9ccf7a64d1d5010c/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/7cf2e7eae8243fbfabf4878172e783/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/77f13a85fb003e33d6a83d1a368650/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ddfa910117b55cce6939f065225d22/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (21 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory