File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/5a92a2716426fc3d7f1f09d102f2b6/.command.log
Size
929 bytes
Task
DAQ:FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ (659_Lx-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/5a92a2716426fc3d7f1f09d102f2b6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/5a92a2716426fc3d7f1f09d102f2b6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/67976646e4082429978924cb9f8052/659_Lx-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/NGSCheckMate/SNP_GRCh38_hg38_wChr.pt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/67976646e4082429978924cb9f8052/659_Lx-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz
==> STAGING COMPLETE (5 inputs)

pe=1
started reading patternfile
finished reading patternfile
finished building count array
Number of reads in the file : 2286531
Scanning fastq file..
finished reading fastq file
finished deleting hash
finished printing count array