File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/647473e1df7cce42ac1d2ef9e572b5/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (659_cAd-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/b1b231963451c25cc0c465e0660535/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/1afb183e237d06dce2a6edf87e3619/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/f7a12318e8a3662444c9a435c34b6f/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/75e712fdb88739a4c910957826fc89/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/a4af2ae610d0457718211c5a1ad3bc/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/ea5bb7e031c1402088ef9a136bee66/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/647473e1df7cce42ac1d2ef9e572b5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/45820135ca8e10ab50f472d01d8668/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/647473e1df7cce42ac1d2ef9e572b5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/7ff863e6f3e9243abe4c0b90a84524/659_cAd-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory