Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 42820380
total bases: 6465877380
Q20 bases: 6275188738(97.0508%)
Q30 bases: 6018767970(93.0851%)
Q40 bases: 6018767970(93.0851%)
Read2 before filtering:
total reads: 42820380
total bases: 6465877380
Q20 bases: 6294564074(97.3505%)
Q30 bases: 6005839069(92.8851%)
Q40 bases: 6005839069(92.8851%)
Read1 after filtering:
total reads: 42504238
total bases: 5551899341
Q20 bases: 5468256341(98.4934%)
Q30 bases: 5285047905(95.1935%)
Q40 bases: 5285047905(95.1935%)
Read2 after filtering:
total reads: 42504238
total bases: 5553243798
Q20 bases: 5463462985(98.3833%)
Q30 bases: 5273347436(94.9598%)
Q40 bases: 5273347436(94.9598%)
Filtering result:
reads passed filter: 85008476
reads failed due to low quality: 620842
reads failed due to too many N: 9070
reads failed due to too short: 2372
reads with adapter trimmed: 43636959
bases trimmed due to adapters: 1736726059
Duplication rate: 9.15476%
Insert size peak (evaluated by paired-end reads): 114
JSON report: 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.html
fastp --in1 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L001_R1_001.fastq.gz --in2 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L001_R2_001.fastq.gz --out1 1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 313 seconds