Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/b6fe507288f9a6029d754db186be8a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/b6fe507288f9a6029d754db186be8a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d6b27d6728ec4d18b36290d36a2cec/1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/foresight_clarity_targets_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d6b27d6728ec4d18b36290d36a2cec/1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_85O-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 2.9s, est remaining 55.5s, peak mem 2106MB, user 69.8s, sys 2.0s, output queue size 42
progress 10% @chr2:70000001, elapsed 5.6s, est remaining 50.1s, peak mem 2875MB, user 148.6s, sys 3.3s, output queue size 117
progress 15% @chr3:8000001, elapsed 7.9s, est remaining 44.9s, peak mem 3743MB, user 224.5s, sys 4.7s, output queue size 122
progress 20% @chr3:176000001, elapsed 10.0s, est remaining 39.9s, peak mem 3743MB, user 286.4s, sys 5.5s, output queue size 174
progress 25% @chr4:135000001, elapsed 11.8s, est remaining 35.4s, peak mem 3839MB, user 344.7s, sys 6.1s, output queue size 302
progress 30% @chr5:101000001, elapsed 13.3s, est remaining 31.0s, peak mem 3930MB, user 387.6s, sys 6.6s, output queue size 464
progress 35% @chr6:91000001, elapsed 15.8s, est remaining 29.4s, peak mem 4277MB, user 454.0s, sys 7.4s, output queue size 625
progress 40% @chr7:66000001, elapsed 18.3s, est remaining 27.5s, peak mem 5094MB, user 524.5s, sys 8.1s, output queue size 197
progress 45% @chr8:74000001, elapsed 21.1s, est remaining 25.8s, peak mem 5155MB, user 605.4s, sys 9.0s, output queue size 359
progress 50% @chr9:76000001, elapsed 23.2s, est remaining 23.2s, peak mem 5157MB, user 672.1s, sys 9.9s, output queue size 518
progress 55% @chr10:115000001, elapsed 25.5s, est remaining 20.9s, peak mem 5157MB, user 754.6s, sys 10.4s, output queue size 348
progress 60% @chr12:3000001, elapsed 27.7s, est remaining 18.5s, peak mem 5157MB, user 825.3s, sys 10.9s, output queue size 510
progress 65% @chr12:111000001, elapsed 30.1s, est remaining 16.2s, peak mem 5157MB, user 889.0s, sys 11.5s, output queue size 672
progress 70% @chr14:72000001, elapsed 31.6s, est remaining 13.6s, peak mem 5157MB, user 941.8s, sys 12.0s, output queue size 833
progress 75% @chr16:42000001, elapsed 34.2s, est remaining 11.4s, peak mem 5157MB, user 1016.2s, sys 12.4s, output queue size 461
progress 80% @chr18:9000001, elapsed 37.4s, est remaining 9.4s, peak mem 5157MB, user 1110.2s, sys 13.0s, output queue size 623
progress 85% @chr18:47000001, elapsed 40.4s, est remaining 7.1s, peak mem 5157MB, user 1205.8s, sys 13.7s, output queue size 785
progress 90% @chrX:27000001, elapsed 42.2s, est remaining 4.7s, peak mem 5157MB, user 1274.6s, sys 14.1s, output queue size 513
progress 95% @chrY:50000001, elapsed 43.5s, est remaining 2.3s, peak mem 5157MB, user 1305.8s, sys 14.3s, output queue size 675
progress 100% @chr15:88000001, elapsed 46.4s, est remaining 0.0s, peak mem 5157MB, user 1360.0s, sys 14.7s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 45044196667
reads: 870183887
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 709.423 user 12.661 sys 722.309 real
done: 1 calls 0.005 user 0.006 sys 0.014 real
exec_no_coor: 1 calls 0.000 user 0.014 sys 0.030 real
execute: 1 calls 0.002 user 0.001 sys 46.396 real
idle: 130 calls 0.167 user 0.001 sys 92.637 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5407842304 mem 1360.945 user 15.017 sys 47.691 real