File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/ff4063423fbd84cd2d302795aa10d0/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vdujomom because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:30,704 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:31,531 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:57:31,702 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:57:32,652 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:57:32,730 - cnv_pipe.batch.run_model - INFO - Processing cluster 1341 with 72 probes
2026-06-05 20:57:33,215 - cnv_pipe.batch.run_model.cluster1341 - INFO - Child process started for cluster 1341 with 72 probes
2026-06-05 20:57:57,859 - cnv_pipe.batch.run_model.cluster1341 - INFO - Child process finished cluster 1341. Wrote cluster_1341_samples.csv and cluster_1341_params.csv
2026-06-05 20:57:57,859 - cnv_pipe.batch.run_model - INFO - Cluster 1341 finished in 25.13 seconds. Status: SUCCESS