File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/d78452a4ac3610331c79ff5035763f/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-05T20:51:59.929635Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:59.930363Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:59.930376Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:59.930382Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:59.930389Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXP6W0LH'
[2026-06-05T20:51:59.930394Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:59.930401Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:59.930406Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:59.930411Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T20:51:59.930417Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:59.930422Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:59.930427Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:59.930433Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:59.930438Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:59.930893Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:59.931032Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:59.938639Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:59.939456Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:59.939599Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:59.939741Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:59.940015Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.940817Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.940929Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.941019Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.941443Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.941676Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.941886Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.942315Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.942682Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.943040Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.943205Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.945086Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.945580Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.945781Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.945923Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:59.946073Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.946233Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.946317Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.946493Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.946648Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.947147Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.947243Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.947391Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.947477Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.947619Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.947696Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.948428Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.948728Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.948872Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.948952Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949094Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949177Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949325Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949404Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949541Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949625Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.949812Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950235Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950381Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950457Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950600Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950680Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950822Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950903Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.951039Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.951121Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.951270Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.951802Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.952381Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.952826Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.952971Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953051Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953187Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953264Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953401Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953479Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953614Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953694Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.953826Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.954103Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.954672Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.954751Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.954894Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.954980Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.972612Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.973344Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.973474Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.974185Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.974367Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.974592Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.974875Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.975392Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.975566Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.976321Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.978227Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.978774Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.979209Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.979428Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.980469Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.981017Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.981291Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.981755Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.982765Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:59.989845Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:51:59.992450Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:51:59.995096Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:51:59.997674Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:52:00.000184Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:52:00.002638Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:52:00.004189Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:52:00.005220Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:52:00.066216Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.067062Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.070201Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:52:00.074811Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.074865Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.075541Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.075852Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.079416Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:52:00.080554Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:52:00.140271Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.140366Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.141191Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.141575Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.145104Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:52:00.146840Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:52:00.149738Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.150464Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.153570Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:52:00.182221Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.182292Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.182979Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.183225Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.187251Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:52:00.188260Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:52:00.297324Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.298070Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.301073Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:52:00.562599Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.563427Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.566666Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:52:01.479056Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.479855Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.482626Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:52:01.511764Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.512602Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.515321Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:52:01.576686Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.577492Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.581022Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:52:01.791853Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.792746Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.795994Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:52:01.808578Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.809347Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.812395Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:52:01.841107Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.841163Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.841811Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.842113Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.846204Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:52:01.847404Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:52:01.957315Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.958146Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.961233Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:52:02.022164Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.022996Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.025954Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:52:02.087075Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.087796Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.090491Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:52:02.151673Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.151747Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.152375Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.152705Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.155859Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:52:02.156863Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:52:02.184589Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.184646Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.185232Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.185454Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.189009Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:52:02.190122Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:52:02.217796Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.217852Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.218448Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.218757Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.222651Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:02.223772Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:52:02.282769Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.283472Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.286485Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:52:02.397756Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.398514Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.401328Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:52:02.414350Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.415029Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.417825Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:52:02.430802Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.431421Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.434321Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:52:02.447206Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.448074Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.451118Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:52:02.464032Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.464659Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.467646Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:52:02.829165Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.829819Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.832609Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:52:02.861682Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.862337Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.864965Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:52:02.926261Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.926883Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.929718Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:52:02.990920Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.991584Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.994341Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:52:03.023432Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.023957Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.026427Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:52:03.055613Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.056126Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.058773Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:52:03.119952Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.120466Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.123322Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:52:03.152295Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.152846Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.155556Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:52:03.216691Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.217199Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.219655Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:52:03.248955Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.249469Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.251848Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:03.281238Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.281733Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.284005Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:52:03.313455Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.313943Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.316197Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:03.317518Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.317986Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.320422Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:52:03.349692Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.349755Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.350216Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.350460Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.352944Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:52:03.353367Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:52:03.366586Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.367047Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.369702Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:52:03.382667Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.382716Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.383109Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.383431Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.385982Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:52:03.386926Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:52:03.399296Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.414950Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.414987Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.415009Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.415381Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.417638Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:52:03.447115Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.447161Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.447596Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.449743Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:52:03.479275Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.643204Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.643640Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.646193Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:52:03.675399Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.707279Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.707727Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.710107Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:52:03.739437Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.203800Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.204231Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.206695Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:52:04.235981Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.236232Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.236370Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.236597Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.236893Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.241259Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.242504Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.265416Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:04.270471Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.270506Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.270530Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.270705Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.270948Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.273738Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.274736Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.302975Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.303016Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.303180Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.305675Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:04.334876Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.650348Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:10.470612Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:10.470612Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] 
[2026-06-05T20:52:10.470612Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:10.470654Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] 
[2026-06-05T20:52:10.470662Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:10.470670Z] [nf-dad78452a4ac3610331c79ff5035763f-c00dc-4ptz2] [731_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec