Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/b2b54e23b49b3409fe196863ad91cb/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6364050760c5582cbdad0b85841682/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6364050760c5582cbdad0b85841682/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/b2b54e23b49b3409fe196863ad91cb/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:51:57.287813Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:57.291108Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:57.291118Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:57.291122Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:57.291126Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXefDYEZ'
[2026-06-05T20:51:57.291130Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:57.291134Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:57.291138Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:57.291141Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-05T20:51:57.291145Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:57.291149Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:57.291152Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:57.291156Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:57.291159Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:57.291745Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:57.291859Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:57.297405Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:57.297944Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:57.298144Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:57.298473Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:57.298712Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299434Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299533Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299604Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299719Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299824Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300190Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300303Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300385Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300511Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300801Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301330Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301451Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301629Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301712Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.303121Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.303406Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.303580Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:57.303941Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304177Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304529Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304603Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304715Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304778Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304899Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304962Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305375Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305517Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305843Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305907Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306015Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306080Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306196Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306256Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306380Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306447Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306553Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306613Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306720Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306778Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306923Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307057Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307521Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307582Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307684Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307743Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307884Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307946Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308113Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308177Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308281Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308341Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308446Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308604Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309084Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309146Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309252Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309313Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309417Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309479Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309592Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309651Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309759Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309822Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324063Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324530Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324596Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324746Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324817Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324899Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.324966Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.325072Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.325141Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.325186Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:57.328580Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329127Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329377Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329833Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.330072Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.330484Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.331989Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.332403Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:51:57.333495Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.334506Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:51:57.335087Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.341079Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:51:57.344144Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:51:57.346772Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:51:57.347917Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:51:57.348799Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:51:57.451070Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.451864Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.454956Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:51:57.516223Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.517035Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519598Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:51:57.781857Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.782672Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.786008Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:51:58.147505Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.147614Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.148343Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.149013Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.151958Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:51:58.152804Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:58.182256Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.183079Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.186024Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:51:58.215261Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.215367Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.216143Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.216720Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.219509Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:51:58.220543Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:51:58.250233Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.250316Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.251038Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.251607Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.254084Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:51:58.283732Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:51:58.285144Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.285235Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.285947Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.286482Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.289178Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:58.290194Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:51:58.290656Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.291261Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.294221Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:51:58.323728Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.324459Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.327085Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:51:58.356303Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.356980Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.359692Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:51:58.421210Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.421326Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.422000Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.422363Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.425254Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:51:58.426603Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:51:58.454373Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.455087Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.457874Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:51:58.487534Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.488263Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.490897Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:51:58.520493Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.521207Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.524246Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:51:58.585672Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.586413Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.589239Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:51:58.650665Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.650773Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.651438Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.652019Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.655019Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:51:58.656367Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:51:58.684332Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.684988Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.687617Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:51:58.704119Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:51:58.717245Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.717902Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.720409Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:51:58.720941Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.721524Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.724074Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:51:58.753779Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.753896Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.754481Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.755153Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.757885Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:51:58.758744Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:51:58.788656Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.788755Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.789351Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.789940Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.793255Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:51:58.793924Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:51:59.055953Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.056042Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.056573Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.058381Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.059389Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:51:59.061536Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:51:59.123250Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.123362Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.123927Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.124264Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.127394Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:51:59.128447Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:51:59.156208Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.156284Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.156823Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.157341Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.160142Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:51:59.190489Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:51:59.191045Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.191711Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.193227Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.193817Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.194143Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:51:59.196549Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:51:59.258171Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.258259Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.258722Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.259395Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.262663Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:51:59.263065Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:51:59.323858Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.324457Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.327316Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:51:59.388748Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.389281Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.391852Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:51:59.421580Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.422128Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.424685Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:51:59.454592Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.455166Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.457805Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:51:59.669579Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.669677Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.670190Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.670424Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.673333Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:51:59.674458Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:51:59.679764Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.680254Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.682641Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:51:59.712471Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.712568Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.712607Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.713056Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.714654Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.716186Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:51:59.717375Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:51:59.748044Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.763993Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.764470Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.767003Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:51:59.828759Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.943030Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.943517Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.946374Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:51:59.975780Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.979456Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.979856Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.982121Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:52:00.012728Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.126944Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.127415Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.130432Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:52:00.159645Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.474434Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.474886Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.477407Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:52:00.506791Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.571148Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.571565Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.573897Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:52:00.603730Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.603980Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.604111Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.604732Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.606028Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.607558Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:00.609065Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:00.610070Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:00.638346Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.638420Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.638443Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.638644Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.640139Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.640741Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:00.642776Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:00.672229Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.672301Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.672490Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.674634Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:00.705343Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.973710Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:07.847235Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:07.847235Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] 
[2026-06-05T20:52:07.847235Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:07.847284Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] 
[2026-06-05T20:52:07.847290Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:07.847296Z] [nf-97b2b54e23b49b3409fe196863ad91cb-dbc40-pbgw9] [577_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec