File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/98b5bdc9a2e5dc68f3ad2f4240f40c/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-o_vmf78g because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:59,002 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:59,874 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:58:00,047 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:58:01,065 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:58:01,237 - cnv_pipe.batch.run_model - INFO - Processing cluster 1513 with 191 probes
2026-06-05 20:58:01,637 - cnv_pipe.batch.run_model.cluster1513 - INFO - Child process started for cluster 1513 with 191 probes
2026-06-05 20:59:00,177 - cnv_pipe.batch.run_model.cluster1513 - INFO - Child process finished cluster 1513. Wrote cluster_1513_samples.csv and cluster_1513_params.csv
2026-06-05 20:59:00,179 - cnv_pipe.batch.run_model - INFO - Cluster 1513 finished in 58.94 seconds. Status: SUCCESS