File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/45d0d22eec6d9d32d3df16c82655f2/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-n0zmqt9t because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:32,288 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:33,154 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:33,322 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:34,307 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:34,463 - cnv_pipe.batch.run_model - INFO - Processing cluster 989 with 179 probes
2026-06-05 20:56:34,857 - cnv_pipe.batch.run_model.cluster989 - INFO - Child process started for cluster 989 with 179 probes
2026-06-05 20:57:29,468 - cnv_pipe.batch.run_model.cluster989 - INFO - Child process finished cluster 989. Wrote cluster_989_samples.csv and cluster_989_params.csv
2026-06-05 20:57:29,470 - cnv_pipe.batch.run_model - INFO - Cluster 989 finished in 55.01 seconds. Status: SUCCESS