File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/f807f2c37657ee5ec0dede52dcf0d2/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXtXAo2C/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXtXAo2C/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXtXAo2C/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T20:51:57.287804Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:57.291134Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:57.291158Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:57.291163Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:57.291167Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXtXAo2C'
[2026-06-05T20:51:57.291171Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:57.291176Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:57.291179Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:57.291183Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-05T20:51:57.291186Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:57.291190Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:57.291193Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:57.291197Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:57.291200Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:57.291593Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:57.291870Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:57.297445Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:57.297980Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:57.298206Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:57.298579Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:57.298845Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299283Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299376Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299451Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299569Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299637Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299754Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299815Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300118Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300386Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300599Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300774Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.300849Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301065Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301262Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.303202Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.303482Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:57.303942Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304614Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304742Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.304970Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305052Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305179Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305261Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.305554Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306084Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306303Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306382Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306499Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306566Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306679Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.306745Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307039Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307461Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307585Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307648Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307756Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307819Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307932Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.307993Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308102Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308162Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308273Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.308338Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309312Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309659Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309772Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.309835Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310007Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310070Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310181Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310244Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310355Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310417Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310529Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310591Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.310867Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311273Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311387Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311454Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311562Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311625Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311734Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311797Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311903Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.311970Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.327537Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.327961Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.328162Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.328223Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.328497Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329144Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329276Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329563Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.329860Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.331115Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.331429Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.331761Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.332060Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.332258Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:57.332655Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.333438Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.334178Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.336456Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.336959Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:57.337524Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.345324Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:51:57.352054Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:51:57.353989Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:51:57.354102Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:51:57.354185Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:51:57.354326Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:51:57.418635Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.419269Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.422634Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:51:58.135291Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.136144Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.138990Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:51:58.300725Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.301535Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.304213Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:51:58.524190Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:51:58.566381Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.567189Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.569914Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:58.631495Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.631600Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.632370Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.632742Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.636187Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:51:58.636917Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.637352Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:51:58.637983Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.640623Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:51:58.670204Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.670292Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.670981Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.672475Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.673214Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:51:58.675043Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:51:58.706040Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.706868Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.709488Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:51:58.739076Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.739824Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.742458Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:51:58.804416Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.805164Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.807837Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:51:58.821275Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.821949Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.824503Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:51:58.853900Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.854631Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.857505Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:51:58.886903Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.886999Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.887681Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.888410Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.891203Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:58.892327Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:51:59.003018Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.003805Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.006614Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:51:59.719935Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.720682Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.723500Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:51:59.785149Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.785249Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.785908Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.787611Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.789176Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:51:59.790290Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:51:59.820093Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.820198Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.820821Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.821425Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.824029Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:59.825202Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:51:59.854675Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.855339Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.857855Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:51:59.887284Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.887380Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.887966Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.889660Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.891535Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:51:59.892212Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:51:59.922853Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.922938Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.923511Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.923812Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.926555Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:51:59.927541Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:51:59.988240Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.988896Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.991765Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:51:59.992846Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.993512Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.995947Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:52:00.107990Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.108627Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.111220Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:00.172524Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.173113Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.175977Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:00.437485Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.438165Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.440715Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:52:00.471285Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.471867Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.474059Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:52:00.503945Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.504531Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.507285Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:00.536631Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.537184Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.539902Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:00.569471Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.570016Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.572326Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:52:00.602143Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.602226Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.602707Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.603294Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.605757Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:00.606471Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:00.635776Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.636303Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.638841Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:00.900726Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.901324Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.903848Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:00.933467Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.933558Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.934052Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.934286Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.936763Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:52:00.937660Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:00.966285Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.966371Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.966820Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.968314Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.969798Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:00.970844Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:52:01.000560Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.000651Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.000681Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.001114Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.001528Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.001677Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.004467Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:52:01.005645Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:01.006577Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:01.065998Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066070Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066491Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066743Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.069411Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:01.070469Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:52:01.099087Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.099577Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.101914Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:52:01.131463Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.646552Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.647042Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.649643Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:01.655002Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.655460Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.658428Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:52:01.687864Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.687947Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.802030Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.802460Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.805307Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:01.834557Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.048999Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.049412Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.051623Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:52:02.082300Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.082378Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.082749Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.085014Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:52:02.146765Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.361090Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.361467Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.363854Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:02.393436Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.808013Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.808416Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.810381Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:02.840420Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.840657Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.840782Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.841353Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.842017Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.845326Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:02.845847Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.846160Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.874352Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.874424Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.874448Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.874642Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.876249Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.876499Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.878944Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.908580Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.908653Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.908825Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.911005Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:02.940679Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.956251Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:07.829603Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:07.829603Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] 
[2026-06-05T20:52:07.829603Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:07.829647Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] 
[2026-06-05T20:52:07.829654Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:07.829660Z] [nf-faf807f2c37657ee5ec0dede52dcf0d2-5c9be-fms5b] [587_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec