File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/ba4243338e258b7bbe1cc6b68b1f7a/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-wjcjehik because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:15,661 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:16,476 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:16,639 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:17,633 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:17,794 - cnv_pipe.batch.run_model - INFO - Processing cluster 894 with 192 probes
2026-06-05 20:56:18,224 - cnv_pipe.batch.run_model.cluster894 - INFO - Child process started for cluster 894 with 192 probes
2026-06-05 20:57:16,403 - cnv_pipe.batch.run_model.cluster894 - INFO - Child process finished cluster 894. Wrote cluster_894_samples.csv and cluster_894_params.csv
2026-06-05 20:57:16,404 - cnv_pipe.batch.run_model - INFO - Cluster 894 finished in 58.61 seconds. Status: SUCCESS