Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/49899ed78fbd973ab903009e0f3f17/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/49899ed78fbd973ab903009e0f3f17/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-na2773s2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:17,578 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:18,372 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:18,540 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:19,441 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:19,599 - cnv_pipe.batch.run_model - INFO - Processing cluster 911 with 192 probes
2026-06-05 20:56:19,967 - cnv_pipe.batch.run_model.cluster911 - INFO - Child process started for cluster 911 with 192 probes
2026-06-05 20:57:16,927 - cnv_pipe.batch.run_model.cluster911 - INFO - Child process finished cluster 911. Wrote cluster_911_samples.csv and cluster_911_params.csv
2026-06-05 20:57:16,929 - cnv_pipe.batch.run_model - INFO - Cluster 911 finished in 57.33 seconds. Status: SUCCESS