File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/21b9bbcdbe812dce318cb59e1abd57/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLVyeKr/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLVyeKr/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLVyeKr/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T20:51:56.675788Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.676258Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.676272Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.676278Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.676284Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXLVyeKr'
[2026-06-05T20:51:56.676289Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.676297Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.676301Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.676306Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T20:51:56.676312Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.676317Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.676323Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.676330Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.676335Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.676724Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.676818Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.683800Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.684316Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.684543Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.684775Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.684953Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.685341Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.685448Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.685535Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.685679Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.685762Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.686163Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.686267Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.686450Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.687207Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.687703Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.689774Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.690388Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.690654Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.691200Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.691419Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.691733Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.691814Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.691957Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.692035Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.692313Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.692408Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.692587Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.692755Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693112Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693191Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693337Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693416Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693553Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693633Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693776Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.693871Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.694011Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.694123Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.694458Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.694844Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.695052Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.695178Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.695386Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.695492Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.695684Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.695771Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.696147Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.696530Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.697308Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.697385Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.697674Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698195Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698352Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698435Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698578Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698658Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698797Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.698875Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.699015Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.699093Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.699243Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.699368Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.699976Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700059Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700195Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700271Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700406Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700485Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700620Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.700705Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.717242Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.717402Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.717504Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.717717Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.717816Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.717930Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.718030Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.718184Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.718287Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.719826Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.720190Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.720923Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.721237Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.721708Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.722180Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.722845Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.723685Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.724482Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.725269Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.730719Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:56.733204Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:51:56.736956Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:51:56.741882Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:56.744786Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:51:56.744968Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:51:56.747474Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:51:56.905252Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.906091Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.908665Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:51:57.871335Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.872118Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.874713Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:58.286495Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.287353Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.290392Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:51:58.501724Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.502649Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.505611Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:51:58.534427Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.535179Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.537944Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:51:58.649180Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.649936Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.652698Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:51:58.681773Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.682652Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.685086Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:51:58.714304Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.714993Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.717438Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:51:58.778735Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.779474Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.782147Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:51:58.843303Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.844344Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.844911Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:51:58.846664Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.846779Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.847759Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:58.847890Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.848200Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.850735Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:51:58.851503Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:51:58.879940Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.879986Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.880008Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.880631Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.880880Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.881492Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.885040Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:51:58.887523Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:51:58.888106Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:51:59.597387Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.598168Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.600826Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:51:59.629943Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.630634Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.633441Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:51:59.662516Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.663225Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.665917Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:52:00.127829Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.128649Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.131689Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:00.192613Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.192710Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.193426Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.193671Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.197728Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:00.198488Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:52:00.225695Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.226381Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.229342Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:00.242094Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.242763Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.245508Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:00.258483Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.259209Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262235Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:52:00.275050Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.275698Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.278620Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:00.589924Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.589991Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.590686Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.590962Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.595610Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:52:00.595783Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:52:00.655427Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.655513Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.656178Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.656529Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.660461Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:52:00.661584Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:52:00.770588Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.770662Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.771274Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.771556Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.775881Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:52:00.776169Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:00.835720Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.835795Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.836396Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.836733Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.840140Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:00.841331Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:00.900989Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.901658Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.904738Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:52:00.933574Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.934254Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.936774Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:00.998042Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.998619Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.001656Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:01.062675Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.063322Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066485Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:52:01.227672Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.228368Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.231382Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:52:01.292364Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.293061Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.296050Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:01.407373Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.408024Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.411119Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:01.472014Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.472649Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.475716Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:01.504602Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.505152Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.507677Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:52:01.537064Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.537677Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.540178Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:52:01.569566Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.570177Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.572806Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:52:01.573715Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.574256Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.576766Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:52:01.606034Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.606859Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.607318Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.608387Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.611436Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:52:01.612234Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:52:01.641019Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.641579Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.644778Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:52:01.673710Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.674285Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.676699Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:52:01.706013Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.170521Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.171034Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.173928Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:52:02.202960Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.366947Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.367388Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.370184Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:02.431290Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.431785Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.434608Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:02.495647Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.110528Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.110608Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.111081Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.111410Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.114757Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:03.143541Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:52:03.175762Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.175828Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.175854Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.176311Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.178704Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:52:03.208093Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.123169Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.123695Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.126107Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:04.155298Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.170915Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.171266Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.173167Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:04.202826Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.203041Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.203141Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.203449Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.203861Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.207887Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.209263Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:04.210183Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.237239Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.238484Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.238655Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.240286Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.240548Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.241004Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.243031Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.272189Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.272228Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.272374Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.274651Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:04.304123Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271610Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.563942Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.563942Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] 
[2026-06-05T20:52:15.563942Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.563984Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] 
[2026-06-05T20:52:15.563992Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.564000Z] [nf-8f21b9bbcdbe812dce318cb59e1abd57-44652-rp7bj] [886_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec