Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b3a638f21da186ab70435a12cf4d4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b3a638f21da186ab70435a12cf4d4/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:51:56.360832Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.361454Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.361466Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.361471Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.361475Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXVqMApB'
[2026-06-05T20:51:56.361478Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.361483Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.361487Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.361490Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] memMb: 1547923
[2026-06-05T20:51:56.361493Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.361497Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.361500Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.361504Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.361508Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.362148Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.362269Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.368118Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.368828Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.369010Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.369357Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.369614Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.370516Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.370607Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.370788Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.371155Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.371262Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.371421Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.371555Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.372050Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.373509Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.374339Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.374753Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.374969Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.375137Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.375559Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.375786Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.375933Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.376023Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.376189Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.376277Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.376551Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.376635Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.376827Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377076Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377194Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377260Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377378Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377447Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377557Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377622Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377733Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377808Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377921Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377984Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.378119Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.378270Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.378482Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.378742Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379142Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379203Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379323Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379394Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379507Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379572Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379679Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379742Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379900Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.379965Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.380338Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.380708Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.380818Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.380883Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.380991Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.381054Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.381163Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.381224Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.396414Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.396858Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.396926Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397084Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397156Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397238Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397304Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397410Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397476Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.397524Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.401709Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.402267Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.402803Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.404361Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.404870Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:56.405627Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.406229Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.408718Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.409540Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:51:56.409723Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.412057Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.416573Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:51:56.420326Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:51:56.420969Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:51:56.425947Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:51:56.427151Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:51:56.476969Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.477661Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.483731Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:51:56.494869Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.495511Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.498822Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:56.511692Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.512332Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.516607Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:51:56.577211Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.577921Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.581084Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:51:57.343959Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.344738Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.347778Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:51:57.409055Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.409801Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.413128Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:51:57.474277Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.475024Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.477991Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:51:57.483341Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.483986Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.487136Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:51:57.748668Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.749451Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.752328Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:51:57.781637Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.782350Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.784782Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:57.846629Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.847361Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.850440Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:51:58.252634Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:51:58.262851Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.262941Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.263587Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.264244Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.267093Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:51:58.268305Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:51:58.330041Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.330136Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.330769Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.331395Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.333906Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:51:58.336392Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:51:58.365681Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.366366Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.369386Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:51:58.480757Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.481469Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.484405Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:51:58.545805Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.546504Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.549841Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:51:58.661119Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.661807Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.664560Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:51:58.677954Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.678580Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.681630Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:51:58.694768Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.695384Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.698062Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:51:58.760956Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.761588Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.764707Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:58.825724Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.826346Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.829144Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:58.890647Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.891301Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.894248Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:58.955918Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.956511Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.959937Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:51:59.371951Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.372568Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.375186Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:51:59.436561Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.437184Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.440043Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:51:59.551942Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.552566Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.555332Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:59.617899Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.618532Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.621508Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:51:59.883307Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.884110Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.887376Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:52:00.098896Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.098984Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.099569Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.101453Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.103264Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:52:00.104521Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:52:00.165969Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.166080Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.166610Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.167230Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.170420Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:52:00.171082Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:00.232738Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.232812Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.233280Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.233740Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.236975Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:52:00.237991Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:52:00.298010Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.298109Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.298150Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.298666Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.299105Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.299520Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.303533Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:52:00.304082Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:52:00.304636Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:52:00.364157Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.364228Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.364259Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.364707Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.365429Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.368423Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:52:00.480395Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.480930Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.484402Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:52:00.545130Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.659528Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.660015Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.662959Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:52:00.692089Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.756137Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.756618Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.759437Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:52:00.820616Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.084979Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.085430Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.087996Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:01.118559Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.382937Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:52:02.384995Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.385059Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.385433Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.387850Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:52:02.401072Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.401593Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.404150Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:52:02.417561Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.433259Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.433482Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.433604Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.433912Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.434352Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.438195Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:02.438638Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.462105Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.467052Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.467106Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.467129Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.467323Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.467510Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.470593Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.497433Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.499851Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.499906Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.500083Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.502283Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:02.531857Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.953311Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.249839Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.249839Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] 
[2026-06-05T20:52:15.249839Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.249894Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] 
[2026-06-05T20:52:15.249902Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.249908Z] [nf-289b3a638f21da186ab70435a12cf4d4-0d70a-jl5k2] [591_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec