File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/7faeece2e04e202f0eb4f9f7bbce4d/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXmHIdno/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXmHIdno/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXmHIdno/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T20:52:00.242146Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:52:00.242696Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:52:00.242707Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:52:00.242711Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:52:00.242715Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXmHIdno'
[2026-06-05T20:52:00.242719Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:52:00.242724Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:52:00.242728Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:52:00.242731Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:52:00.242735Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:52:00.242739Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:52:00.242742Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:52:00.242746Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:52:00.242750Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:52:00.243372Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:52:00.243456Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:52:00.249047Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:52:00.249681Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:52:00.249989Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:52:00.250624Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:52:00.250772Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.251214Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.251805Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.251899Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.252075Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.252216Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.252617Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.252858Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.253010Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.253181Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.253300Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.254525Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255026Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:52:00.255193Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255351Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255420Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255534Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255601Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255715Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255779Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255948Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256035Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256449Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256525Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256640Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256707Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256824Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256889Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257002Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257069Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257179Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257248Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257375Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257481Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257881Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.257944Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258083Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258156Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258273Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258341Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258460Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258527Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258645Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.258717Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.259819Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260040Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260502Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260624Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260775Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260852Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260972Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261043Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261162Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261229Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261347Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261412Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261555Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.261685Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262226Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262296Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262416Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262481Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262600Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262667Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262779Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.262849Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.276721Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.276844Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.276928Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.277095Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.277167Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.277256Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.277320Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.277427Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.277499Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:00.278555Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:52:00.281133Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.282130Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.282481Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.282917Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.284505Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.285654Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:00.286091Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.286400Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.286925Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:52:00.287410Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.289923Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.290379Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:52:00.296304Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:52:00.298299Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:52:00.300229Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:52:00.301564Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:52:00.405417Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.406146Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.409335Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:52:00.470248Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.470979Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.473730Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:00.535215Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.535926Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.539358Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:52:01.051622Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.052410Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.055375Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:01.560021Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:52:01.567656Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.567733Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.567781Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.568448Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.569015Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.569612Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.573558Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:01.575592Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:52:01.576578Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:52:01.636450Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.636522Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.637184Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.637768Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.641072Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:52:01.642008Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:52:01.702387Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.702481Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.703162Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.703451Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.706855Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:01.707766Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:52:01.817925Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.818663Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.822095Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:01.883182Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.883913Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.887112Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:01.916037Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.917029Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.917508Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.919590Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.921599Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:52:01.922824Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:01.983936Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.984640Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.987616Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:52:02.016891Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.017633Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.020454Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:02.081831Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.082514Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.085255Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:02.847804Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.848485Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.851226Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:52:03.012633Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.013166Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.016120Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:52:03.077365Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.077919Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.080790Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:03.192133Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.192768Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.195905Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:52:03.224672Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.225168Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.228010Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:52:03.289360Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.289927Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.292642Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:03.322107Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.322704Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.324865Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:03.387760Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.387826Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.388333Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.388808Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.391667Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:03.392194Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:03.421577Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.422623Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.423204Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.425264Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.425608Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:03.427881Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:52:03.489431Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.489989Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.492381Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:52:03.523128Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.523649Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.525776Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:03.555467Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.556027Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.558398Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:03.588694Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.589239Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.591624Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:52:03.703386Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.703941Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.706989Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:52:03.735988Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.736454Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.738944Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:03.768461Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.768525Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.768978Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.770614Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.771485Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:52:03.773593Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:03.802717Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.802763Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.803196Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.803416Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.806340Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:52:03.807549Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:03.835462Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.835945Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.838707Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:52:03.851679Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.852113Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.854560Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:52:03.883869Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.884426Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.887258Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:52:03.916674Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.917175Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.919735Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:52:03.949250Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.949721Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.952082Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:52:03.982731Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.983194Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.985709Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:52:04.015147Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.015582Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.017791Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:04.047496Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.047921Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.050263Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:52:04.079834Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.080292Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.082525Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:04.595201Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.595258Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.595650Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.596127Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.598914Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:52:04.599846Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:52:04.629051Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.629100Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.629450Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.631587Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:52:04.661431Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.661482Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.661831Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.664316Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:04.693872Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.857918Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.858319Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.861032Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:04.890313Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.954352Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.954760Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.957276Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:52:04.986962Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.100812Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.101153Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.103480Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:05.132960Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.246783Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.247108Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.249530Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:52:05.278947Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.993642Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.993986Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.996322Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:06.025992Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.026229Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.026357Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.027102Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.028662Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.028929Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:06.031773Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:06.032877Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:06.060949Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.061006Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.061027Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.061219Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.061786Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.064272Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:06.065505Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:06.094793Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.094843Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.095000Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.097498Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:06.126813Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.847956Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:19.130631Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:19.130631Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] 
[2026-06-05T20:52:19.130631Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:19.130680Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] 
[2026-06-05T20:52:19.130687Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:19.130693Z] [nf-bf7faeece2e04e202f0eb4f9f7bbce4d-fb3c0-wftmf] [579_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec