File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/3f5f0337180aca505daaf9a1ae0fb6/.command.err
Size
53.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

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[2026-06-05T20:51:56.754511Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.755778Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.755814Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.755821Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.755826Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxuRvRw'
[2026-06-05T20:51:56.755830Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.755837Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.755841Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.755845Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] memMb: 1547923
[2026-06-05T20:51:56.755849Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.755852Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.755856Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.755860Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.755864Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.756675Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.756728Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.762495Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.763174Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.763391Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.763753Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.763953Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.765378Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.765619Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.765764Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.765891Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.766736Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.766913Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.768094Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.768437Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.768657Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.768911Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.769077Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.769450Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.769525Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.769639Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.769708Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.770094Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.770170Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.770729Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.770842Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771043Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771126Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771236Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771304Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771415Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771476Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771720Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771805Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771915Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.771978Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.772485Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.772850Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773017Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773086Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773242Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773308Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773419Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773481Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773588Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773648Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773760Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.773848Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.774254Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.774945Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.775194Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.776069Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.776293Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.776463Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.776642Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.776714Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.776981Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.777415Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.777534Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.777595Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.777706Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.777765Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.792361Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793117Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793245Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793428Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793510Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793597Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793667Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.793892Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.794442Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.794505Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.795508Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.797089Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.797664Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.798072Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.798845Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.799295Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.802690Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:51:56.804720Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:51:56.805491Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.807795Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.809456Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:51:56.809555Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.810273Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:51:56.817132Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:51:56.818799Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:51:56.820283Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:51:56.821293Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:56.876246Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.877124Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.881691Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:51:56.909445Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.910215Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.914773Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:51:56.976075Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.976887Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.980093Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:51:57.693260Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.694007Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.696596Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:57.726125Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.727081Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.727429Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.729844Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.731499Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:51:57.732660Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:51:57.844403Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.845120Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.847946Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:51:57.909742Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.910511Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.914062Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:51:58.276052Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.276821Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.279878Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:51:58.309825Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.310531Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.313279Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:51:58.342669Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.343375Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.346012Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:51:58.375539Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.376231Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.379076Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:51:58.408250Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.408958Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.411922Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:51:58.673708Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.674482Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.677521Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:51:58.678763Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.679399Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.682120Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:51:58.711790Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.712440Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.715584Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:51:58.716285Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.716814Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.720006Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:51:58.749065Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.749743Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.752787Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:51:58.783104Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.783735Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.786782Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:51:58.848220Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.848879Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.851942Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:51:58.913557Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.914191Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.917479Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:51:59.028595Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.029242Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.032646Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:59.194312Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.194925Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.197997Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:51:59.227216Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.228295Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.229851Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.230739Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.231153Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:51:59.233456Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:51:59.263861Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.264465Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.267416Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:51:59.328924Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.329573Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.332490Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:51:59.394036Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394593Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397927Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:59.509450Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.510186Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.513469Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:59.574355Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.575192Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.578210Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:59.639215Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.639946Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.642899Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:51:59.704058Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.704754Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.707379Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:51:59.768720Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.769487Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.772397Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:59.833664Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.834403Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.837548Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:51:59.998717Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.999448Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.002452Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:52:00.063369Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.063981Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.066727Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:52:00.127878Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.128539Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.132150Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:52:00.243006Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.243695Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.246478Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:00.275604Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.276251Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.279135Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:52:00.340209Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.340304Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.340922Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.341252Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.344283Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:52:00.345247Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:52:00.405690Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.405781Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.720159Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.720747Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.723896Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:52:00.784672Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.300001Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.300469Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.303232Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:52:01.332850Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.547316Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.547763Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.550438Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:52:01.612054Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.676008Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.676413Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.679063Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:52:01.708487Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.872715Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.873121Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.875775Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:01.937390Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.352261Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.352702Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.355225Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:52:02.384820Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.385061Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.385194Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.385784Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.388278Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:02.388755Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.389246Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.391449Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.421020Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.421086Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.421108Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.421298Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.422784Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.423522Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.425578Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.455139Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.455210Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.455390Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.458144Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:02.488519Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.360886Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.644901Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.644901Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] 
[2026-06-05T20:52:15.644901Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.644968Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] 
[2026-06-05T20:52:15.644978Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.644984Z] [nf-cf3f5f0337180aca505daaf9a1ae0fb6-b96ff-5knq7] [592_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec