Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/d7e1b94a8e13c39a6408615e72acf4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6364050760c5582cbdad0b85841682/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6364050760c5582cbdad0b85841682/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/d7e1b94a8e13c39a6408615e72acf4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:52:07.248103Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:52:07.250407Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:52:07.250426Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:52:07.250430Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:52:07.250435Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXf7oB7W'
[2026-06-05T20:52:07.250439Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:52:07.250445Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:52:07.250448Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:52:07.250452Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:52:07.250456Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:52:07.250459Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:52:07.250463Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:52:07.250466Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:52:07.250470Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:52:07.251168Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:52:07.251303Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:52:07.257541Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:52:07.258324Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:52:07.258480Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:52:07.258634Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:52:07.258796Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.259104Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.259206Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.259295Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.259734Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.259848Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.260009Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.260401Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.260890Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.261238Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.262632Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.263502Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.263742Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:52:07.263963Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.264575Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.264670Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.264852Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.264922Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.265262Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.265447Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.265613Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.265881Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.265994Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266059Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266169Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266228Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266341Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266406Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266516Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266583Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266691Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.266792Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267025Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267350Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267462Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267527Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267635Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267696Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267805Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267867Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.267982Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.268040Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.268148Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.268231Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.268809Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269206Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269317Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269444Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269562Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269630Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269741Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269802Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269908Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.269968Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.270076Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.270136Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.270251Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.270334Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271054Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271148Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271256Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271315Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271424Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271487Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271600Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271665Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271773Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.271834Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.285503Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.285973Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.286044Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.286205Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.286272Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.286361Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.286429Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.287746Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.287903Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:07.288488Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:52:07.289840Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.290833Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.291247Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.291818Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.293210Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.294185Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.294370Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:52:07.294714Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.295211Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.297431Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.297886Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:52:07.300505Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:07.308020Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:07.308906Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:52:07.310516Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:52:07.311887Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:07.313169Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:52:07.413260Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.414002Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.417384Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:52:07.979577Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.980446Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.983891Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:08.145147Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.145999Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.148985Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:52:08.612191Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.612998Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.616216Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:52:08.827664Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.828485Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.831510Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:52:09.043166Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.043985Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.046838Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:52:09.158701Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.159502Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.162784Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:52:09.424318Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.425191Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.428565Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:52:09.457839Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.458584Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.461488Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:09.573020Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.573844Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.576643Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:52:09.606963Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.607679Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.610741Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:52:09.673186Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.673979Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.677117Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:52:09.738512Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.739256Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.742460Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:52:09.803515Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.804273Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.807143Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:52:09.868561Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.869400Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.872526Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:10.034129Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.034872Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.037823Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:10.099210Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.099994Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.103134Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:52:10.365218Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.366122Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.369279Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:10.430597Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.431325Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.434350Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:10.495824Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.496551Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.499559Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:10.528842Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.529485Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.532336Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:10.593846Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.593918Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.593950Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.594548Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.595107Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.597887Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:52:10.598714Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.599314Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:10.602438Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:52:10.631340Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.631407Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.632092Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.632653Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.635850Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:10.636938Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:10.664814Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.665455Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.668399Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.669138Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:10.669801Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.670079Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.671124Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.674022Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:52:10.675325Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:10.703399Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.703476Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.704005Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.704632Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.708240Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:52:10.709097Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:10.738596Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.739194Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.742326Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:52:11.003765Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.004439Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.007392Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:52:11.021472Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.022093Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.024751Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:52:11.038971Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.039578Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.042467Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:52:11.071732Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.072390Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.075200Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:11.104537Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.105074Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.108317Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:52:11.137384Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.138006Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.140657Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:11.171279Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.171936Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.174749Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:52:11.204092Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.204725Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.207283Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:52:11.236579Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.237162Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.239733Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:52:11.270301Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.270885Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.273856Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:52:11.302790Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.303381Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.306066Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:52:11.568080Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.568169Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.568740Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.569223Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.573442Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:11.604832Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:52:11.634331Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.634929Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.637798Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:11.699175Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.699743Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.703214Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:52:11.732111Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.732688Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.735819Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:11.765071Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.765622Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.768457Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:11.797693Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.798209Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.800785Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:11.806781Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.807281Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.810232Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:52:11.839300Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.839807Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.842605Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:52:11.843582Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.875457Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.189895Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.190385Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.193331Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:12.223519Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.487716Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.488159Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.490706Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:12.552155Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.552556Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.554845Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:12.560373Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.560744Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.563135Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:52:12.592600Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.592655Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.624384Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.624747Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.626811Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:52:12.657322Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.422666Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.423156Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.425657Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:52:13.455284Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.719865Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.720253Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.722750Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:52:13.752276Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.752528Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.752658Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.753144Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.753718Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.757243Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:13.757518Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:13.760201Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:13.788408Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.788463Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.788486Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.788695Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.789268Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.791640Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:13.819417Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:13.822947Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.823011Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.823211Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.825369Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:13.855213Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:17.826354Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:26.138738Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:26.138738Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] 
[2026-06-05T20:52:26.138738Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:26.138801Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] 
[2026-06-05T20:52:26.138808Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:26.138815Z] [nf-69d7e1b94a8e13c39a6408615e72acf4-1a51b-6wwjg] [586_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec