cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:191000001, elapsed 0.0s, est remaining 0.8s, peak mem 420MB, user 0.2s, sys 0.4s, output queue size 109
progress 10% @chr2:216000001, elapsed 0.1s, est remaining 0.7s, peak mem 420MB, user 0.4s, sys 0.9s, output queue size 228
progress 15% @chr3:139000001, elapsed 0.1s, est remaining 0.7s, peak mem 421MB, user 0.6s, sys 1.2s, output queue size 390
progress 20% @chr4:78000001, elapsed 0.2s, est remaining 0.6s, peak mem 421MB, user 1.0s, sys 1.6s, output queue size 551
progress 25% @chr5:89000001, elapsed 0.2s, est remaining 0.6s, peak mem 421MB, user 1.4s, sys 2.2s, output queue size 713
progress 30% @chr2:22000001, elapsed 0.2s, est remaining 0.5s, peak mem 421MB, user 1.7s, sys 2.7s, output queue size 875
progress 35% @chr7:59000001, elapsed 0.3s, est remaining 0.5s, peak mem 421MB, user 1.9s, sys 3.3s, output queue size 1036
progress 40% @chr8:55000001, elapsed 0.3s, est remaining 0.5s, peak mem 421MB, user 2.1s, sys 4.2s, output queue size 1197
progress 45% @chr9:69000001, elapsed 0.3s, est remaining 0.4s, peak mem 423MB, user 2.5s, sys 5.2s, output queue size 1359
progress 50% @chr10:51000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 2.8s, sys 7.0s, output queue size 1520
progress 55% @chr11:108000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 3.0s, sys 8.7s, output queue size 1682
progress 60% @chr13:16000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 3.3s, sys 10.0s, output queue size 1844
progress 65% @chr14:37000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 3.5s, sys 11.4s, output queue size 2005
progress 70% @chr16:12000001, elapsed 0.5s, est remaining 0.2s, peak mem 423MB, user 4.0s, sys 12.5s, output queue size 2167
progress 75% @chr17:64000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 4.4s, sys 13.8s, output queue size 2329
progress 80% @chr20:5000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 4.9s, sys 15.2s, output queue size 2491
progress 85% @chrX:34000001, elapsed 0.6s, est remaining 0.1s, peak mem 423MB, user 5.1s, sys 16.0s, output queue size 2653
progress 90% @chr21:43000001, elapsed 0.7s, est remaining 0.1s, peak mem 423MB, user 5.5s, sys 16.6s, output queue size 2815
progress 95% @chr15_KI270905v1_alt:1, elapsed 0.7s, est remaining 0.0s, peak mem 423MB, user 5.8s, sys 17.3s, output queue size 3326
progress 100% @HLA-DRB1*15:03:01:02:1, elapsed 1.0s, est remaining 0.0s, peak mem 423MB, user 6.2s, sys 20.2s, output queue size 2508
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.009 real
"predict_filter": 136 calls 0.002 user 0.000 sys 0.017 real
advance: 3219322 calls 0.762 user 7.835 sys 11.690 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 1.063 real
fetch_ref: 384 calls 0.012 user 0.030 sys 0.757 real
idle: 20057 calls 0.643 user 0.183 sys 358.824 real
init: 1 calls 0.365 user 0.153 sys 0.792 real
overall: 443830272 mem 7.812 user 23.236 sys 2.922 real