Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/3b8b4efb375b0756b639f0d7b5e015/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/3b8b4efb375b0756b639f0d7b5e015/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/112639299efdd88a08f017443bab66/germline_control_1.haplotyper.merged.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/112639299efdd88a08f017443bab66/germline_control_1.haplotyper.merged.vcf.gz.tbi
==> STAGING COMPLETE (5 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	358/1/0/1/0/0/0
ls: cannot access '*.vcf': No such file or directory
ls: cannot access '*.bcf': No such file or directory
ls: cannot access '*.bcf.gz': No such file or directory
ls: cannot access '*.csi': No such file or directory