cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 3853
progress 10% @chr2:19966724, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 13886
progress 15% @chr2:189002955, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 8142
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 18615
progress 25% @chr4:88385499, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 28875
progress 30% @chr5:147323898, elapsed 0.2s, est remaining 0.5s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 38911
progress 35% @chr6:127148841, elapsed 0.2s, est remaining 0.4s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 48863
progress 40% @chr7:128748573, elapsed 0.3s, est remaining 0.4s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 58350
progress 45% @chr9:1056216, elapsed 0.3s, est remaining 0.3s, peak mem 290MB, user 0.0s, sys 0.0s, output queue size 7281
progress 50% @chr10:32544247, elapsed 0.3s, est remaining 0.3s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 17214
progress 55% @chr11:48216810, elapsed 0.3s, est remaining 0.3s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 27682
progress 60% @chr12:21887826, elapsed 0.4s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 37232
progress 65% @chr13:49278350, elapsed 0.4s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 48280
progress 70% @chr15:42694528, elapsed 0.4s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 58312
progress 75% @chr16:30927573, elapsed 0.5s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 67880
progress 80% @chr17:42338687, elapsed 0.5s, est remaining 0.1s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 78566
progress 85% @chr19:5664022, elapsed 0.5s, est remaining 0.1s, peak mem 341MB, user 0.0s, sys 0.0s, output queue size 88975
progress 90% @chr19:55613619, elapsed 0.6s, est remaining 0.1s, peak mem 341MB, user 0.0s, sys 0.0s, output queue size 98477
progress 95% @chr22:36930337, elapsed 0.9s, est remaining 0.0s, peak mem 2528MB, user 5.4s, sys 1.8s, output queue size 3225
progress 100% @chr6_GL000254v2_alt:3877871, elapsed 0.9s, est remaining 0.0s, peak mem 2528MB, user 5.5s, sys 1.8s, output queue size 8274
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395351
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.528 user 0.104 sys 2.043 real
done: 1 calls 0.258 user 0.089 sys 0.356 real
execute: 1 calls 0.008 user 0.001 sys 0.919 real
fetch_reads: 208647 calls 0.091 user 0.000 sys 0.132 real
fetch_ref: 2042 calls 0.000 user 0.013 sys 0.026 real
fetch_vcf: 2042 calls 0.668 user 0.062 sys 0.919 real
idle: 92 calls 0.001 user 0.002 sys 31.454 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 3.873 user 1.540 sys 5.856 real
overall: 2651488256 mem 8.396 user 15.605 sys 2.278 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory