[2026-06-05T20:51:57.063976Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:57.066310Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:57.066330Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:57.066335Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:57.066340Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXfUG7M0'
[2026-06-05T20:51:57.066344Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:57.066350Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:57.066354Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:57.066358Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:57.066362Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:57.066366Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:57.066369Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:57.066373Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:57.066377Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:57.067046Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:57.067132Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:57.073774Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:57.074459Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:57.074621Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:57.074774Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:57.074970Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.075535Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.076554Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.076838Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.077022Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.078843Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.078964Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.079095Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:57.079250Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.079332Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.079457Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.079627Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.079919Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.079986Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080102Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080165Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080276Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080340Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080450Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080511Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080693Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.080769Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.081076Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.081470Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.081664Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.081755Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.081891Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.081962Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.082089Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.082162Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.082290Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.082372Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.082593Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.082933Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083044Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083106Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083216Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083278Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083407Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083488Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083606Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083669Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083783Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.083848Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084015Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084402Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084525Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084590Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084759Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084824Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084931Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.084994Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.085101Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.085163Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.085271Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.085330Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.098798Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.098886Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.098958Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099098Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099185Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099267Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099337Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099445Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099509Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.099560Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:57.104832Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.105541Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.105876Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.106266Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.108324Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.108777Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:51:57.109306Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.109800Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.110354Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.112374Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.115541Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:57.115781Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:51:57.120016Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:51:57.120783Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:57.124171Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:51:57.125493Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:51:57.191432Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:51:57.229106Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.229167Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.229199Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.229804Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.230352Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.232254Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.232811Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:51:57.235458Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:51:57.236706Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:51:58.199679Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.199747Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.200366Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.200740Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.204278Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:51:58.205361Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:51:58.265363Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.266199Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.268930Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:51:58.330191Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.330871Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.333417Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:51:58.395123Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.395774Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.398716Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:51:58.611568Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.612341Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.615289Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:51:58.644672Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.645271Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.647698Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:51:58.759490Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.760096Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.762703Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:51:58.792062Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.792618Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.795101Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:51:58.958064Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.958692Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.961519Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:51:59.072909Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.073546Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.076335Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:51:59.288103Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.288730Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.291560Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:59.354562Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.355189Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.357915Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:51:59.419571Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.420201Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.423129Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:59.428372Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.428879Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.431277Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:51:59.444734Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.445251Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.448183Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:59.477249Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.478335Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.478840Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.478904Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.480871Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.481708Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.484352Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:51:59.485464Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:59.486626Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:51:59.548090Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.548178Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.548726Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.550438Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.552167Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:51:59.552879Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:51:59.582673Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.583497Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.585015Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.585652Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.587414Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:51:59.588546Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:51:59.618752Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.619668Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.620154Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.622099Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.622660Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:51:59.625043Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:51:59.686782Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.687297Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.690343Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:51:59.751851Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.752386Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.755223Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:51:59.785606Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.786121Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.788782Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:51:59.950428Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.950979Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.954018Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:00.015312Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.015823Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.018560Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:52:00.080124Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.080633Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.083406Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:00.696120Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.696659Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.699787Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:52:00.760937Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.761501Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.764636Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:52:00.793660Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.794207Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.796910Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.797171Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:52:00.797720Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.800647Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:52:00.830165Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.830252Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.830695Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.830933Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.835212Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:00.836487Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:52:00.865572Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.080100Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.080638Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.083915Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:52:01.145201Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.145303Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.145772Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.148565Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:01.209953Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.324098Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.324573Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.327743Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:52:01.388977Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.954160Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.954641Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.957570Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:52:01.970920Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.971337Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.974033Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:52:02.003300Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.003357Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.668589Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.669056Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.672008Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:02.733620Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.947837Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.948255Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.950834Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:52:03.012309Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.012533Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.012651Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.013192Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.015353Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.015760Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:03.018236Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:03.019186Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:03.048760Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.048819Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.048843Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.049026Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.049576Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.052302Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:03.053403Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:03.082981Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.083047Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.083235Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.085834Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:03.115428Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.637105Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.955249Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.955249Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] 
[2026-06-05T20:52:15.955249Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.955300Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] 
[2026-06-05T20:52:15.955307Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.955315Z] [nf-4cbec00f295df0ff09a5d59a69ac9bc0-aae41-x7n9x] [574_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec