File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/151d1cecab060058629bf226680df0/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ijgs5s0c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:55:07,129 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:55:07,955 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:55:08,117 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:55:09,114 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:55:09,295 - cnv_pipe.batch.run_model - INFO - Processing cluster 487 with 183 probes
2026-06-05 20:55:09,668 - cnv_pipe.batch.run_model.cluster487 - INFO - Child process started for cluster 487 with 183 probes
2026-06-05 20:56:05,690 - cnv_pipe.batch.run_model.cluster487 - INFO - Child process finished cluster 487. Wrote cluster_487_samples.csv and cluster_487_params.csv
2026-06-05 20:56:05,691 - cnv_pipe.batch.run_model - INFO - Cluster 487 finished in 56.40 seconds. Status: SUCCESS