Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/5c86abfa00af5343e61269d4f81d41/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/5c86abfa00af5343e61269d4f81d41/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-4bo_ract because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:31,544 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:32,447 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:32,622 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:33,609 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:33,794 - cnv_pipe.batch.run_model - INFO - Processing cluster 905 with 176 probes
2026-06-05 20:56:34,183 - cnv_pipe.batch.run_model.cluster905 - INFO - Child process started for cluster 905 with 176 probes
2026-06-05 20:57:29,591 - cnv_pipe.batch.run_model.cluster905 - INFO - Child process finished cluster 905. Wrote cluster_905_samples.csv and cluster_905_params.csv
2026-06-05 20:57:29,593 - cnv_pipe.batch.run_model - INFO - Cluster 905 finished in 55.80 seconds. Status: SUCCESS