cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo AlignmentStat Sig_18_tissue.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo Sig_18_tissue.sentieon.insert_size_metrics --algo QualDistribution Sig_18_tissue.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle Sig_18_tissue.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle Sig_18_tissue.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:158000001, elapsed 0.0s, est remaining 0.4s, peak mem 81MB, user 0.1s, sys 0.2s, output queue size 3
progress 10% @chr2:73000001, elapsed 0.0s, est remaining 0.4s, peak mem 81MB, user 0.2s, sys 0.6s, output queue size 1
progress 15% @chr2:234000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.3s, sys 1.2s, output queue size 7
progress 20% @chr3:154000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.3s, sys 1.7s, output queue size 14
progress 25% @chr4:115000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.4s, sys 2.2s, output queue size 2
progress 30% @chr5:85000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.5s, sys 2.5s, output queue size 1
progress 35% @chr6:63000001, elapsed 0.1s, est remaining 0.2s, peak mem 81MB, user 0.6s, sys 2.9s, output queue size 2
progress 40% @chr7:55000001, elapsed 0.1s, est remaining 0.2s, peak mem 81MB, user 0.7s, sys 3.4s, output queue size 2
progress 45% @chr8:56000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.9s, sys 3.8s, output queue size 10
progress 50% @chr9:72000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 1.0s, sys 4.2s, output queue size 1
progress 55% @chr10:97000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 1.0s, sys 4.6s, output queue size 1
progress 60% @chr11:121000001, elapsed 0.2s, est remaining 0.1s, peak mem 81MB, user 1.1s, sys 5.1s, output queue size 2
progress 65% @chr13:13000001, elapsed 0.2s, est remaining 0.1s, peak mem 81MB, user 1.2s, sys 5.6s, output queue size 2
progress 70% @chr14:63000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.3s, sys 6.0s, output queue size 15
progress 75% @chr16:13000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.4s, sys 6.3s, output queue size 13
progress 80% @chr17:82000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.5s, sys 6.8s, output queue size 2
progress 85% @chr20:22000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.6s, sys 7.3s, output queue size 1
progress 90% @chrX:45000001, elapsed 0.4s, est remaining 0.0s, peak mem 103MB, user 2.0s, sys 7.5s, output queue size 114
progress 95% @chrY:45000001, elapsed 0.4s, est remaining 0.0s, peak mem 117MB, user 2.5s, sys 7.6s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.3s, est remaining 0.0s, peak mem 154MB, user 6.6s, sys 7.8s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50047062
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.493 user 3.802 sys 5.547 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.005 sys 1.351 real
idle: 80 calls 0.044 user 0.046 sys 57.452 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 162291712 mem 6.829 user 8.392 sys 2.405 real